Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ABG082_RS07830 Genome accession   NZ_CP157353
Coordinates   1527218..1528120 (+) Length   300 a.a.
NCBI ID   WP_348936736.1    Uniprot ID   -
Organism   Bacillus sp. BS1807G30     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1522218..1533120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG082_RS07810 (ABG082_07810) - 1522887..1524620 (+) 1734 WP_348936735.1 glycosyltransferase -
  ABG082_RS07815 (ABG082_07815) - 1524617..1524892 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  ABG082_RS07820 (ABG082_07820) sucC 1525069..1526229 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  ABG082_RS07825 (ABG082_07825) sucD 1526252..1527154 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  ABG082_RS07830 (ABG082_07830) dprA 1527218..1528120 (+) 903 WP_348936736.1 DNA-processing protein DprA Machinery gene
  ABG082_RS07835 (ABG082_07835) topA 1528315..1530390 (+) 2076 WP_008344821.1 type I DNA topoisomerase -
  ABG082_RS07840 (ABG082_07840) trmFO 1530461..1531765 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABG082_RS07845 (ABG082_07845) xerC 1531828..1532745 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34079.45 Da        Isoelectric Point: 8.1703

>NTDB_id=1006165 ABG082_RS07830 WP_348936736.1 1527218..1528120(+) (dprA) [Bacillus sp. BS1807G30]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSCYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1006165 ABG082_RS07830 WP_348936736.1 1527218..1528120(+) (dprA) [Bacillus sp. BS1807G30]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTGTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTAGTAGAGGAAGATTGGATGATTGTGAGCGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGTGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTTCAATGCAAAGAAAAGAGCGGATCGCTT
ATTACAGCCTATCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCTTTGAGCGGTG
TTCAATATACTGAACTCACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38

Multiple sequence alignment