Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABIS02_RS02110 | Genome accession | NZ_CP157346 |
| Coordinates | 441794..442933 (-) | Length | 379 a.a. |
| NCBI ID | WP_030099928.1 | Uniprot ID | A0AAW3V6A1 |
| Organism | Paraburkholderia fungorum strain zafu-N9 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 436794..447933
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABIS02_RS02085 (ABIS02_02085) | - | 437031..437414 (+) | 384 | WP_406867870.1 | nuclear transport factor 2 family protein | - |
| ABIS02_RS02090 (ABIS02_02090) | - | 437595..438578 (-) | 984 | Protein_414 | 2-isopropylmalate synthase | - |
| ABIS02_RS02095 (ABIS02_02095) | ybiB | 439114..440085 (-) | 972 | WP_028199070.1 | DNA-binding protein YbiB | - |
| ABIS02_RS02100 (ABIS02_02100) | - | 440350..441048 (+) | 699 | WP_030099930.1 | fumarylacetoacetate hydrolase family protein | - |
| ABIS02_RS02105 (ABIS02_02105) | maiA | 441074..441718 (+) | 645 | WP_406867871.1 | maleylacetoacetate isomerase | - |
| ABIS02_RS02110 (ABIS02_02110) | pilA | 441794..442933 (-) | 1140 | WP_030099928.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| ABIS02_RS02115 (ABIS02_02115) | rsmD | 443174..443788 (+) | 615 | WP_028199074.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| ABIS02_RS02120 (ABIS02_02120) | coaD | 443901..444416 (+) | 516 | WP_028199075.1 | pantetheine-phosphate adenylyltransferase | - |
| ABIS02_RS02125 (ABIS02_02125) | - | 444480..444737 (+) | 258 | WP_028199076.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| ABIS02_RS02130 (ABIS02_02130) | hisC | 444844..445923 (-) | 1080 | WP_406867872.1 | histidinol-phosphate transaminase | - |
| ABIS02_RS02135 (ABIS02_02135) | pth | 445999..446601 (-) | 603 | WP_030099925.1 | aminoacyl-tRNA hydrolase | - |
| ABIS02_RS02140 (ABIS02_02140) | - | 446750..447370 (-) | 621 | WP_028199079.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
Sequence
Protein
Download Length: 379 a.a. Molecular weight: 40263.18 Da Isoelectric Point: 5.1734
>NTDB_id=1006102 ABIS02_RS02110 WP_030099928.1 441794..442933(-) (pilA) [Paraburkholderia fungorum strain zafu-N9]
MFSFFKRFKGSKESDNAPEESQTAAAPAVPVAPATPPAPRPAMPASVDTQPAAAPSTNEPEAAALETVEIVPPPQQDASA
KRSWLTRLKTGLSKTSSSLTGIFVGTKIDEDLYEELETALLMSDAGVEATEFLLESLREKVRTERLTDPQQVKAALRTLL
IDLLKPLEKSLMLGRAQPLVVMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVSQE
SGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQEGAPHEVLLVIDANTGQNALAQVKAFDD
ALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGG
MFSFFKRFKGSKESDNAPEESQTAAAPAVPVAPATPPAPRPAMPASVDTQPAAAPSTNEPEAAALETVEIVPPPQQDASA
KRSWLTRLKTGLSKTSSSLTGIFVGTKIDEDLYEELETALLMSDAGVEATEFLLESLREKVRTERLTDPQQVKAALRTLL
IDLLKPLEKSLMLGRAQPLVVMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVSQE
SGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQEGAPHEVLLVIDANTGQNALAQVKAFDD
ALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGG
Nucleotide
Download Length: 1140 bp
>NTDB_id=1006102 ABIS02_RS02110 WP_030099928.1 441794..442933(-) (pilA) [Paraburkholderia fungorum strain zafu-N9]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATAACGCGCCAGAAGAATCGCAGACCGCGGCGGCGCC
GGCTGTGCCGGTTGCGCCCGCCACGCCTCCCGCGCCTCGGCCGGCTATGCCCGCTAGCGTCGATACTCAGCCGGCTGCCG
CGCCGTCCACCAATGAACCTGAAGCGGCCGCGCTCGAAACCGTCGAAATCGTCCCGCCGCCCCAGCAGGACGCGAGCGCC
AAGCGTTCCTGGCTCACTCGCCTGAAGACCGGTCTGTCGAAAACGAGTTCGAGCCTGACCGGCATTTTCGTCGGCACGAA
GATCGACGAGGATTTGTACGAAGAGCTCGAAACCGCGTTGCTGATGTCAGATGCCGGCGTCGAGGCCACCGAGTTCCTGC
TCGAATCGTTGCGCGAGAAAGTGCGCACCGAGCGTCTCACCGATCCGCAGCAGGTGAAAGCGGCGCTGCGCACGCTGTTG
ATCGACCTGCTGAAGCCGCTGGAAAAATCGCTGATGCTCGGCCGCGCCCAACCATTGGTCGTGATGATCGCGGGCGTGAA
CGGGGCGGGCAAAACCACCAGCATCGGCAAGCTCGCCAAGCATTTGCAAAGTTTCGATCAGTCGGTGCTGCTGGCTGCAG
GCGACACCTTCCGCGCCGCCGCACGCGAGCAACTCGCGATCTGGGGCCAGCGCAACAATGTGACGGTGGTGTCGCAGGAA
AGCGGCGATCCGGCCGCCGTGATTTTCGACGCGGTGGGCGCCGCGCGGGCGCGAAAGATCGACGTCATGATGGCGGACAC
GGCCGGCCGTCTGCCAACCCAGTTGCATCTGATGGAAGAACTGCGCAAGGTGAAACGCGTGATCGGCAAGGCGCAAGAAG
GCGCGCCGCATGAGGTGCTGCTGGTGATCGATGCGAACACCGGCCAGAATGCGCTCGCACAAGTGAAGGCCTTTGACGAC
GCGCTCGGCCTCACCGGCCTGATCGTCACCAAACTCGACGGTACGGCGAAGGGCGGCATTCTCGCGGCAATCGCACGCCA
GCGTCCGATTCCGGTGTACTTCATCGGCGTCGGCGAAAAGGTGGAGGACTTGCAGCCTTTCAGCGCGGAAGAGTTTTCGG
ATGCGTTGCTGGGCGGTTGA
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATAACGCGCCAGAAGAATCGCAGACCGCGGCGGCGCC
GGCTGTGCCGGTTGCGCCCGCCACGCCTCCCGCGCCTCGGCCGGCTATGCCCGCTAGCGTCGATACTCAGCCGGCTGCCG
CGCCGTCCACCAATGAACCTGAAGCGGCCGCGCTCGAAACCGTCGAAATCGTCCCGCCGCCCCAGCAGGACGCGAGCGCC
AAGCGTTCCTGGCTCACTCGCCTGAAGACCGGTCTGTCGAAAACGAGTTCGAGCCTGACCGGCATTTTCGTCGGCACGAA
GATCGACGAGGATTTGTACGAAGAGCTCGAAACCGCGTTGCTGATGTCAGATGCCGGCGTCGAGGCCACCGAGTTCCTGC
TCGAATCGTTGCGCGAGAAAGTGCGCACCGAGCGTCTCACCGATCCGCAGCAGGTGAAAGCGGCGCTGCGCACGCTGTTG
ATCGACCTGCTGAAGCCGCTGGAAAAATCGCTGATGCTCGGCCGCGCCCAACCATTGGTCGTGATGATCGCGGGCGTGAA
CGGGGCGGGCAAAACCACCAGCATCGGCAAGCTCGCCAAGCATTTGCAAAGTTTCGATCAGTCGGTGCTGCTGGCTGCAG
GCGACACCTTCCGCGCCGCCGCACGCGAGCAACTCGCGATCTGGGGCCAGCGCAACAATGTGACGGTGGTGTCGCAGGAA
AGCGGCGATCCGGCCGCCGTGATTTTCGACGCGGTGGGCGCCGCGCGGGCGCGAAAGATCGACGTCATGATGGCGGACAC
GGCCGGCCGTCTGCCAACCCAGTTGCATCTGATGGAAGAACTGCGCAAGGTGAAACGCGTGATCGGCAAGGCGCAAGAAG
GCGCGCCGCATGAGGTGCTGCTGGTGATCGATGCGAACACCGGCCAGAATGCGCTCGCACAAGTGAAGGCCTTTGACGAC
GCGCTCGGCCTCACCGGCCTGATCGTCACCAAACTCGACGGTACGGCGAAGGGCGGCATTCTCGCGGCAATCGCACGCCA
GCGTCCGATTCCGGTGTACTTCATCGGCGTCGGCGAAAAGGTGGAGGACTTGCAGCCTTTCAGCGCGGAAGAGTTTTCGG
ATGCGTTGCTGGGCGGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
53.828 |
100 |
0.594 |