Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABKP32_RS09655 | Genome accession | NZ_CP157342 |
| Coordinates | 2059098..2059478 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 2024CK-00538 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2054098..2064478
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABKP32_RS09625 (ABKP32_09625) | tadA | 2054216..2054719 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| ABKP32_RS09630 (ABKP32_09630) | - | 2054726..2055850 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABKP32_RS09635 (ABKP32_09635) | ung | 2055847..2056560 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABKP32_RS09640 (ABKP32_09640) | - | 2056611..2057207 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABKP32_RS09645 (ABKP32_09645) | gspK | 2057438..2058397 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABKP32_RS09650 (ABKP32_09650) | xcpW | 2058397..2059098 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABKP32_RS09655 (ABKP32_09655) | xcpV | 2059098..2059478 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABKP32_RS09660 (ABKP32_09660) | - | 2059468..2060022 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABKP32_RS09665 (ABKP32_09665) | - | 2060032..2060640 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABKP32_RS09670 (ABKP32_09670) | - | 2060678..2061451 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABKP32_RS09675 (ABKP32_09675) | - | 2061469..2061810 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABKP32_RS09680 (ABKP32_09680) | - | 2061822..2062802 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABKP32_RS09685 (ABKP32_09685) | kdsB | 2062814..2063575 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1006031 ABKP32_RS09655 WP_000836911.1 2059098..2059478(-) (xcpV) [Acinetobacter baumannii strain 2024CK-00538]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1006031 ABKP32_RS09655 WP_000836911.1 2059098..2059478(-) (xcpV) [Acinetobacter baumannii strain 2024CK-00538]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |