Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   FGL18_RS08345 Genome accession   NZ_LR594046
Coordinates   1727327..1728361 (-) Length   344 a.a.
NCBI ID   WP_138126339.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain NCTC6403     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722327..1733361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL18_RS08310 (NCTC6403_01710) - 1722951..1723253 (-) 303 WP_003052320.1 YlxQ-related RNA-binding protein -
  FGL18_RS08315 (NCTC6403_01711) - 1723246..1723542 (-) 297 WP_003057040.1 YlxR family protein -
  FGL18_RS08320 (NCTC6403_01712) nusA 1723558..1724715 (-) 1158 WP_003052330.1 transcription termination factor NusA -
  FGL18_RS08325 (NCTC6403_01713) rimP 1724858..1725352 (-) 495 WP_044022604.1 ribosome maturation factor RimP -
  FGL18_RS08335 (NCTC6403_01715) trmB 1725837..1726472 (-) 636 WP_138126337.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FGL18_RS08340 (NCTC6403_01716) - 1726472..1727263 (-) 792 WP_003052472.1 phosphotransferase family protein -
  FGL18_RS08345 (NCTC6403_01717) pptB 1727327..1728361 (-) 1035 WP_138126339.1 ABC transporter permease Regulator
  FGL18_RS08350 (NCTC6403_01718) pptA 1728364..1729089 (-) 726 WP_138126341.1 ABC transporter ATP-binding protein Regulator
  FGL18_RS08355 (NCTC6403_01719) - 1729161..1729580 (+) 420 WP_012767493.1 HIT family protein -
  FGL18_RS08360 (NCTC6403_01720) - 1729577..1729897 (+) 321 WP_138126343.1 chemotaxis protein -
  FGL18_RS08365 (NCTC6403_01721) - 1730059..1731327 (-) 1269 WP_138126345.1 LCP family protein -
  FGL18_RS08370 (NCTC6403_01722) - 1731339..1731860 (-) 522 WP_138126347.1 N-acetyltransferase -
  FGL18_RS08375 (NCTC6403_01723) tsaE 1731853..1732296 (-) 444 WP_138126349.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40237.52 Da        Isoelectric Point: 10.2471

>NTDB_id=1005803 FGL18_RS08345 WP_138126339.1 1727327..1728361(-) (pptB) [Streptococcus dysgalactiae strain NCTC6403]
MKALFLKRRQDFQKQQSKYLRYVFNDHFVLVLMFLLGFCLVQYSQLLKHFPSNHWPIWLFLMVGMLLLLHLGSVATYLEE
PDHHFLLPKEEAVVAHIKQAERSALVIWGCLQTVILIFLYPIFNRLGFSLVTFALLLLGLLALKRLLLGYKVRQFLKKDG
LDWEKAIAFESNRKQAILKFYSLFTNVKGISTKVKKRSYLNPLLKLVKENSKHLWLTLYLKAFLRSSDYLGLFLRLLLLS
SLALLFISNTYLSVALALVFNYLILFQLLSLYHHYDYHYMTSLYPENHQGKRANLLTFLRGLSCLILVINLLLCHSLEKA
LILVVVMGVITLFYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1005803 FGL18_RS08345 WP_138126339.1 1727327..1728361(-) (pptB) [Streptococcus dysgalactiae strain NCTC6403]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAGAGCAAATACCTGCGCTATGTCTTTAATGACCA
TTTTGTCTTGGTCCTGATGTTTTTGCTTGGTTTTTGCTTGGTCCAATACAGCCAGTTATTGAAGCATTTTCCTAGTAATC
ATTGGCCTATATGGCTCTTTCTCATGGTGGGGATGCTGTTATTGCTTCACTTGGGCTCGGTGGCAACTTATTTAGAAGAG
CCTGATCACCATTTTCTACTTCCGAAAGAAGAAGCTGTGGTTGCTCATATTAAACAAGCTGAACGCTCTGCCCTTGTAAT
TTGGGGCTGTTTACAGACAGTTATCCTCATCTTTTTATATCCAATCTTCAATCGCCTAGGCTTCTCCTTAGTTACTTTTG
CTCTTTTACTTTTGGGATTACTAGCTCTTAAACGACTCCTTTTGGGGTATAAAGTAAGACAATTTTTAAAGAAAGATGGA
CTGGATTGGGAAAAAGCCATTGCTTTTGAGAGTAATCGTAAACAGGCTATCTTAAAGTTTTATTCTCTTTTCACAAATGT
TAAGGGAATTTCCACAAAGGTTAAGAAAAGATCTTATTTAAATCCTCTTCTAAAATTGGTAAAAGAAAATAGTAAGCACC
TCTGGCTAACGCTCTATTTAAAAGCTTTTTTACGAAGTTCAGACTATTTAGGACTCTTTTTACGCTTGTTATTATTGAGT
TCCCTAGCCTTGCTATTTATTTCTAACACTTACCTATCAGTGGCTTTAGCCCTGGTCTTTAATTATTTGATTCTTTTTCA
ATTGTTGTCTCTTTACCACCATTACGATTACCACTACATGACCAGTCTTTATCCAGAGAATCATCAAGGGAAGCGGGCGA
ATCTATTGACTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTTATCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGTGGTCATGGGAGTCATTACACTTTTCTACCTCCCTTATAAGTTGAAGAAGATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-153)

Bacterial ABC transporter protein EcsB (EcsB)

(152-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.093

100

0.471
  pptB Streptococcus salivarius strain HSISS4

46.802

100

0.468