Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UXR68_RS10165 Genome accession   NZ_CP157301
Coordinates   2071703..2072098 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN84     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2066703..2077098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR68_RS10140 (UXR68_10140) thiE 2067302..2067943 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  UXR68_RS10145 (UXR68_10145) thiM 2067945..2068736 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  UXR68_RS10150 (UXR68_10150) thiD 2068720..2069550 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  UXR68_RS10155 (UXR68_10155) tenA 2069543..2070232 (-) 690 WP_000396068.1 thiaminase II -
  UXR68_RS10160 (UXR68_10160) sceD 2070619..2071314 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  UXR68_RS10165 (UXR68_10165) ssb 2071703..2072098 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  UXR68_RS10170 (UXR68_10170) - 2072292..2072732 (+) 441 WP_000846746.1 YwpF-like family protein -
  UXR68_RS10175 (UXR68_10175) fabZ 2072789..2073229 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  UXR68_RS10180 (UXR68_10180) murA 2073263..2074528 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  UXR68_RS10185 (UXR68_10185) - 2074639..2074872 (-) 234 WP_000384523.1 DUF1146 family protein -
  UXR68_RS10190 (UXR68_10190) - 2075525..2075929 (-) 405 WP_123072734.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1005567 UXR68_RS10165 WP_000932694.1 2071703..2072098(-) (ssb) [Staphylococcus aureus strain BSN84]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1005567 UXR68_RS10165 WP_000932694.1 2071703..2072098(-) (ssb) [Staphylococcus aureus strain BSN84]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment