Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   FGL16_RS04235 Genome accession   NZ_LR594043
Coordinates   811224..814877 (+) Length   1217 a.a.
NCBI ID   WP_014735920.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10237     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 806224..819877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL16_RS04220 (NCTC10237_00813) - 807118..807672 (+) 555 WP_024405313.1 GNAT family N-acetyltransferase -
  FGL16_RS04225 (NCTC10237_00814) - 807687..807851 (+) 165 WP_014735922.1 hypothetical protein -
  FGL16_RS04230 (NCTC10237_00815) rexB 807958..811224 (+) 3267 WP_014735921.1 ATP-dependent nuclease subunit B Machinery gene
  FGL16_RS04235 (NCTC10237_00816) rexA 811224..814877 (+) 3654 WP_014735920.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FGL16_RS04240 (NCTC10237_00817) plsY 814887..815531 (-) 645 WP_014735919.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  FGL16_RS04245 (NCTC10237_00818) parE 815674..817617 (+) 1944 WP_014735918.1 DNA topoisomerase IV subunit B -
  FGL16_RS04250 (NCTC10237_00819) - 817665..818009 (+) 345 WP_014735917.1 hypothetical protein -
  FGL16_RS04255 (NCTC10237_00820) - 818058..818660 (+) 603 WP_014735916.1 Fic family protein -
  FGL16_RS04260 (NCTC10237_00821) - 818693..819196 (+) 504 WP_014735915.1 YkvA family protein -
  FGL16_RS04265 (NCTC10237_00822) - 819225..819785 (+) 561 WP_014735914.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 140011.45 Da        Isoelectric Point: 5.0664

>NTDB_id=1005469 FGL16_RS04235 WP_014735920.1 811224..814877(+) (rexA) [Streptococcus suis strain NCTC10237]
MAFEEFLSAEEIKAVQLAEVNSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDELFISTFT
VKAAGELKERIEKNLNETIAETTDMDLRRHLSAQLADLIKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEKDENGEFRRLVRNFSGNRKDNSGFRQVVYQVRDFSQSTSSPTKWLREQAVQADLYSQERIEQILEQG
FKEKVLDKLYQAGDFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQIISGLRDLGQEVYELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANSQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQESAHSSTDAEEETP
LTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSILENWRAYTKLHSIYD
MIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTE
EKIGKLTLKSKLEDASLKDIRQSEGIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPVLEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDMVREALEAVHVEQAIKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASMQTDPVSQENFVLRGIIDGYLLYDDHIALFDYKTDKYDQSIQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVEVKVN

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=1005469 FGL16_RS04235 WP_014735920.1 811224..814877(+) (rexA) [Streptococcus suis strain NCTC10237]
ATGGCTTTTGAAGAATTTTTAAGCGCGGAAGAAATCAAGGCTGTGCAGCTGGCGGAAGTCAATTCTGATAAGCAACAAAA
ACGCACACCTGAGCAGATTGAAGCCATCTACACGCACGGTCAGAATGTCCTGGTCTCTGCATCGGCTGGGTCAGGAAAGA
CCTTCGTCATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGTGTGGGAATCGACGAGCTCTTTATCTCGACCTTTACA
GTCAAAGCGGCTGGTGAGTTGAAGGAGCGGATTGAGAAAAATCTCAATGAAACCATTGCGGAGACGACGGATATGGACTT
GCGTCGGCATTTGTCTGCCCAGTTGGCGGATTTGATCAAGGCAGATATTGGGACCATGGACTCCTTTACGCAGAAATTGG
TGACAACCTATGGTTATAGCCTTGGCATTTCTCCACAGTTTCGGATTTTACAGGATGAGACAGAAAAAGCGAGTCTGAAA
AAAGAGGTTTTTGACCAGCTCTTTGCAGATTATCTTGAAAAGGATGAAAATGGGGAATTTCGTAGATTGGTTCGCAATTT
TTCGGGCAACCGCAAGGATAATAGTGGTTTCCGTCAGGTTGTTTATCAGGTGCGTGATTTTAGCCAATCGACGAGCAGTC
CAACTAAATGGCTGAGAGAGCAGGCTGTTCAAGCAGATTTGTACAGTCAGGAGCGTATAGAGCAGATCTTAGAGCAAGGC
TTTAAGGAAAAAGTGTTAGACAAGCTCTATCAAGCTGGAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGTTCCGCCAAGTATTTTGCAAATGTGGAAGAAGTCTTGGATTTGCTGACAGGTTTAGATAGTCTGGACCAGAAGGACT
TGATGGAACGGGTTGAAAGAATCCTTCTCATCAATGACCAGTCCAGAGGCAAGGGTCTGACCAATGCCAATCGACCCAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAGCCAGATTATCTCAGGACTTAGAGATTTGGGTCA
GGAAGTTTATGAATTGACCCTGCTGAAAGACTATCAGATTCAAGCTTTGCCAATGCTGATATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCTTTTGAATTTGGCGATATTGGGCATTTCGCTATT
CGTATTTTAGAAGAAAATGCAGACATCCGCCAGTTTTTCCAAGAAAAATATCACGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGAATGTTAGACCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGCGACATTAAGCAGT
CCATCTATCGATTCCGTCAGGCAGATCCGATGATTTTCCAAGAGAAATTTGAACTGTATCAGGCAAATTCTCAGGCTGGG
AAATTGATTTTGCTCAAGGAAAATTTCCGTAGTCAGATTGAGGTCTTGGAGGCAACAAATGCTATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGGGAAATCAAGTATGACGAAACCCACAGTCTAGTGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGC
CCAAGCATGAGATGGAATATTTGATTTACGACCAGCAGGAGAGCGCACATTCTTCAACGGATGCTGAGGAAGAAACACCT
CTGACTGCTGGTGAAATTGAGGTCGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGAGCAGACTTCAAGGACAT
CACTCTCTTGGTACAAAAGCGGACGCACAATGATCTCATTATGTCCATTTTTGAAAAACATGGGATTCCTATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATCATGCTGGATACCTTGCGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCCCTGCTTAAATCACCTATGTTCCGATTCGATGAAGATGAACTGACGCGGATTTCCTTGCA
GGCTGGGACAGGTTTCTTTTATCAGAAAATGGAAATAGCCCAGCAAACAAATGGGCAACATCCTGAACTTATGTCAGGAG
AGTTGAAGAAGAAAATCAAGGATTTCTTGTCTATCTTAGAAAACTGGCGTGCCTATACCAAGCTGCATTCTATTTATGAC
ATGATTTGGAAGATATTCAATGAAAAATTCTACTATGACTATGTCGGTGCGCTTCCAAATGGCAGCAAGCGTCAGGCTAA
TCTATATGCATTAGGTTTGCGTGCCAACCAGTTTGAAAAAACAGGCTACAAGGGCTTGTCCCGCTTCATCGCCATGATTG
ACCGTGCCTTAGCAAATGACAAGGATTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTACAGCTTATGACCATT
CACAAGTCAAAAGGTCTGGAGTTCAAATATGTCTTCCTCATGAACATCGATAAGCGATTCAACTTGGAAGACCATTACCA
GTCAGTCATCATCAGCCGGAAAAATGGTCTAGGTATTCAATATTTAGCGGATATGAAAGATAAGGTAAATAGCCCATTGC
CTCAGGTGCGCGTCTTAATGAACACCCTTCCTTATCAAAATAATCTCCAAGAGCTAAAAATTGCCAATCTCTCAGAACAA
ATGCGGTTGCTTTATGTGGCACTAACGCGTGCCGAGAAGAAGCTGTATCTGGTTGGAAAGGGCAATGCTGACAAGTTAGC
TGAAAAATACGATGGCAAAAAGGAAAATGGCGTACTTGCCCAATCAACTCGTGAAAGCATGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTTTCAGGAGAAGACTTGCACTTCAAGAAAGTCTTTGTGACGGATGAGGATTTGACAGAG
GAGAAGATTGGTAAACTTACATTGAAGAGTAAGCTAGAGGACGCCAGCCTTAAAGATATTCGTCAATCAGAAGGCATTGC
CCAGGCCTTGGACCAGTTGTCTTCTGTTCAAGAGTTGAACGAACGCTATAAGGCTGCCATTGAATTGCCAAGTTTACGCA
CTCCAAGTCAAATCAAGAAACTCTATGAGCCTGTCTTGGAGCAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCCAAA
CGGACCTTCAACTTGCCAGATTTTTCCAAGAAACCAAAAATCACTGGAGCCCAAGTCGGTTCAGCAGTGCATGAACTCAT
GCAACGCTTGGATCTGTCTTGGTTGGTGACAGAAGATATGGTAAGAGAAGCCCTAGAAGCTGTTCATGTTGAGCAAGCGA
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTTGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAC
AAACTCCACCGAGAAGCACCTTTTGCCAGTATGCAGACGGATCCTGTATCTCAGGAAAACTTTGTCCTTCGTGGGATTAT
CGATGGCTACCTACTGTATGATGATCATATTGCCCTCTTTGATTATAAGACAGACAAATACGACCAATCAATCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTATGCGGAGGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAGGATTGAAGTGGTTGAAGTCAAGGTAAACTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(483-897)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.513

100

0.518