Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   FGL16_RS04230 Genome accession   NZ_LR594043
Coordinates   807958..811224 (+) Length   1088 a.a.
NCBI ID   WP_014735921.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10237     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 802958..816224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL16_RS04195 (NCTC10237_00809) - 803965..804348 (+) 384 WP_032512538.1 hypothetical protein -
  FGL16_RS04200 (NCTC10237_00810) - 804520..804648 (+) 129 WP_002943675.1 DUF4044 domain-containing protein -
  FGL16_RS04205 (NCTC10237_00811) tnpA 804905..805369 (+) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -
  FGL16_RS04215 (NCTC10237_00812) obgE 805609..806922 (+) 1314 WP_014735924.1 GTPase ObgE -
  FGL16_RS04220 (NCTC10237_00813) - 807118..807672 (+) 555 WP_024405313.1 GNAT family N-acetyltransferase -
  FGL16_RS04225 (NCTC10237_00814) - 807687..807851 (+) 165 WP_014735922.1 hypothetical protein -
  FGL16_RS04230 (NCTC10237_00815) rexB 807958..811224 (+) 3267 WP_014735921.1 ATP-dependent nuclease subunit B Machinery gene
  FGL16_RS04235 (NCTC10237_00816) rexA 811224..814877 (+) 3654 WP_014735920.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FGL16_RS04240 (NCTC10237_00817) plsY 814887..815531 (-) 645 WP_014735919.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 124567.79 Da        Isoelectric Point: 5.0961

>NTDB_id=1005468 FGL16_RS04230 WP_014735921.1 807958..811224(+) (rexB) [Streptococcus suis strain NCTC10237]
MKLVYTDIRNPLTQYLMDTSAEFAKEAKRVFYIAPNSLSFEMERKVLEYLPEQATFDIIVTRFGQLARYLMIDRKEAGQP
LDDVGLAMIFFRVLSQFEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMESPDKQADLVKIFLAVTDILFK
EGFEHQSKLALLTSLVETGQLDEQLKNIVLVVDGFSRFSAEEEALVSALNERVSEILIGVYASKKAVQATYAEGNVYQAN
VDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHVHQ
GARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRSEDLLNLLKSGLYASISQK
ELDLFESYILFADMKGQAAFSRAFSVNGRADYDAETVKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGTALLEKFMA
FLEAIELPKNVEKMSRNLSEVEQEKEEQVWKSFTHILENFHQIFGKEKLKMDDFLAILQAGMQASHYRTVPATVDVVNVK
SYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSASSSRFDLVSRENIKKNHAAMMSLLNAATEQLVIS
TPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLDNEEWEGQRAFWTVLVRHLKKK
LESQGIEIPTVTGEITSKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLHRI
FERVVMDQSDLDFDQKVDKAILRTRDEAEFAMFYNQDADARYTEEVLDKIARSSATILRDNDLVEIDGQEKSFRQDKALV
FDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQD
PIIKLKDTKNLEQLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAKDILDGRFAINPY
TKDGRSVAGEQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=1005468 FGL16_RS04230 WP_014735921.1 807958..811224(+) (rexB) [Streptococcus suis strain NCTC10237]
ATGAAATTAGTCTATACAGATATTCGCAATCCTCTGACGCAGTATTTAATGGATACCTCGGCAGAATTTGCTAAGGAAGC
TAAGCGAGTTTTTTATATTGCTCCAAACTCTCTATCCTTTGAGATGGAACGCAAGGTCTTGGAATACCTGCCAGAACAGG
CAACTTTTGATATTATCGTGACCCGTTTTGGGCAATTGGCCCGCTATTTGATGATTGATAGGAAAGAAGCAGGTCAACCG
CTGGATGATGTTGGTCTGGCAATGATTTTCTTTCGTGTTCTATCGCAATTTGAAGATGGCGACTTGAAAGTCTATGGTCG
TTTACAGACAGATTTTGGTTTCATTAACCAGCTAGTTGCTTTATACAAAGAATTGCAACGGGCAAATATGTCTATTTTGG
ACTTGGAAGCCATGGAGTCACCAGATAAGCAGGCTGATTTGGTAAAGATTTTTCTGGCTGTAACAGACATTTTGTTCAAA
GAAGGCTTTGAGCATCAGTCTAAGTTAGCACTGCTGACTAGCTTGGTAGAAACTGGTCAGTTGGATGAGCAGTTGAAGAA
CATTGTGCTGGTGGTAGACGGATTTTCTCGTTTTTCGGCAGAAGAAGAAGCTTTAGTAAGTGCTTTAAATGAACGGGTGT
CGGAAATCCTGATTGGTGTATATGCCAGCAAGAAAGCTGTGCAAGCGACCTATGCGGAAGGCAACGTCTATCAAGCCAAC
GTTGACTTTTTACGTCAGTTATCAGCGCAGTTCCAGACTAAGGCTACTTATATTGGTCAAGAGCCAGTCTTGGACAGTAT
CGGTAAATTTTCAAAGAATATGGAAGCCTATTATGACTACAGCGGGACCATGATAGACTTGACTCCAGCAGATCAAGAAA
AAATCCAACTCTGGGAAGTCGTTAACCAAAAAGAAGAGGTGGAACAGGTTGCGACTGCAATTCGTCAGCATGTGCATCAA
GGGGCACGCTATAAAGACATCTTGTTGCTCTTGGGTGATGTGGATAGCTACAAGTTGCAGATTGGCAAGATTTTTGACAA
GTATGATATTCCTTACTATTTCGGCAAGGCAGAGGAGATGAGTCATCATCCTCTGGTCCATTTTGTGGAGTCCTTGGAGC
GCTTGCGTCGCTATCGTTTCCGTTCGGAAGACCTGCTCAATCTCCTCAAATCTGGTTTGTACGCCAGCATTTCCCAAAAG
GAGCTGGACCTATTTGAGTCTTACATCCTCTTTGCGGATATGAAAGGGCAGGCTGCTTTTTCGAGGGCTTTTTCGGTCAA
TGGCAGAGCTGACTATGACGCTGAGACTGTCAAGGAGAAGCGACTGGTCTATGATTTGACTGTCTTGGAACCCCTACGTG
CTAAGATTATGGAACCTTTGAACCAGCTGTTTAAGGCTGGACCACAATCTGGAACTGCCTTGCTTGAGAAATTTATGGCA
TTTTTGGAGGCAATTGAGCTTCCTAAAAATGTGGAAAAAATGTCTCGAAATTTGAGTGAAGTAGAGCAAGAAAAAGAAGA
GCAGGTCTGGAAAAGTTTTACCCATATTCTAGAGAATTTTCATCAGATTTTCGGAAAAGAAAAGTTGAAAATGGATGATT
TTCTGGCTATTTTACAGGCTGGAATGCAGGCCAGTCACTATCGTACCGTTCCTGCAACAGTTGATGTGGTCAATGTCAAA
TCCTATGATTTGATTGAGCCGCACACTGCTAAGTATGTTTATGCTATCGGAATGGGCCAGTCCAATTTTCCAAAAGTTGC
CAAGAATACCAGTCTATTGACAGAAGAAGAGATGGAAAAAGTCAATCTTGTCTCGGCTAGTTCCTCACGTTTCGATTTGG
TCAGCCGAGAGAATATTAAGAAGAACCATGCTGCCATGATGTCTCTGCTTAATGCTGCGACGGAACAGTTAGTTATTTCC
ACACCTCAGATTTATAACGAAGGTGAGGATAGTCTCTCCCCTTATATCAAGATTCTCCAAAAAATGGGGCTGAAATCCGA
AGAACGTGGACGGATTAAAACACTTAGTCCGCAAGACATCGGTCACTACAAGAGTCTCTTATCCCGTTTGATTGAGTCAG
AAAGACCATCTCTTGATAATGAAGAATGGGAAGGGCAGAGGGCCTTCTGGACAGTCTTGGTTCGCCATTTGAAGAAGAAA
TTGGAGTCGCAAGGCATTGAAATTCCGACCGTTACTGGCGAAATTACTTCTAAACAACTTTCAGATGAAACCTTGGCTGC
TTTATATCCAGAGGATAAGCCCCTCAATCTTTCTGCATCCAGCTTGACCAATTTCTACAATAACCAATATCTTTACTTTG
TCCGTAATGTTCTTCGCTTGCGGGAACAGGAATCCATCCATCCGACTGCCTTTCAGCATGGTTTGTTCTTGCATCGGATT
TTTGAACGAGTGGTCATGGACCAATCTGATCTAGATTTTGATCAAAAAGTGGACAAGGCCATCCTGCGTACGCGTGACGA
GGCAGAATTTGCTATGTTTTATAACCAGGATGCGGATGCTCGTTATACGGAGGAAGTGCTGGATAAGATTGCTCGCTCCA
GTGCGACCATTTTGCGGGATAATGATTTGGTTGAAATTGATGGCCAGGAAAAGAGTTTCCGTCAGGATAAGGCGCTGGTT
TTTGACCTTCAAAATGGCAAGAGTGTGCATGTAAATGGTACCATTGACCGCTTGGATACCTTACAAATCAATCAGGCTGT
CGGTGTTGTGGATTACAAGTCCAGTGACCAATCTTTTTCAGTTGGGGATTTTTACAATGGTCTAAAACCTCAGTTGGTAA
CCTACTTGGCAGCCTTACAAGAGCTGGATGAAACCAAGGATAAACCTGTTTTTGGGGCTATGTATTTGCATTTGCAGGAT
CCAATTATCAAATTAAAAGATACGAAGAATTTAGAACAGCTAGAAGGAGCTGCCAATACGAGCTTGGTTTACAAGGGGCT
TTTCTTGAAGGAGGAAAGTCTGGGGCTCAATCATTTTTATCAGACTCGTAACCAACTCTATACGGAAGATGAGTTTGCGG
TGTTATTGAACCACAACCAAGAACTCTACAAACAAGCTGCCAAGGACATCCTGGATGGTCGCTTTGCTATTAATCCTTAT
ACCAAAGATGGGCGTTCGGTGGCAGGTGAGCAGCTGAAGGCAATCACTGGTTTTGAGGCGGATCGGCACATGGGCATGGC
ACGGCGGTTGGTCAAAGAGGCCAAGCGTCAAGATTGGATGGAACGAATGAAAGGAGGTCAGGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(757-1042)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.424

100

0.45

Multiple sequence alignment