Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   ABKA22_RS11545 Genome accession   NZ_CP157287
Coordinates   2281102..2281593 (-) Length   163 a.a.
NCBI ID   WP_251906095.1    Uniprot ID   -
Organism   Lactococcus lactis strain BIM B-1834     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2276102..2286593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA22_RS11545 (ABKA22_11545) comX 2281102..2281593 (-) 492 WP_251906095.1 sigma-70 family RNA polymerase sigma factor Regulator
  ABKA22_RS11550 (ABKA22_11550) ezrA 2281849..2283579 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  ABKA22_RS11555 (ABKA22_11555) tsf 2283784..2284812 (-) 1029 WP_003132668.1 translation elongation factor Ts -
  ABKA22_RS11560 (ABKA22_11560) rpsB 2284933..2285700 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19763.66 Da        Isoelectric Point: 5.6148

>NTDB_id=1005462 ABKA22_RS11545 WP_251906095.1 2281102..2281593(-) (comX) [Lactococcus lactis strain BIM B-1834]
MTYYLEEEGFEILFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLTEVYEGLSAHYQDLLLRQMRGEELTRMERYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1005462 ABKA22_RS11545 WP_251906095.1 2281102..2281593(-) (comX) [Lactococcus lactis strain BIM B-1834]
ATGACATATTACTTGGAAGAAGAGGGTTTTGAAATTCTGTTTTCAGAAATGAAACCTATAGTCATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGGCGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGACAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGGAACGGTATCGCCTTCGTGAAAAAATAAAGGCTATTTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

96.933

100

0.969
  comX Lactococcus lactis subsp. cremoris KW2

76.687

100

0.767

Multiple sequence alignment