Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   ABKA22_RS09235 Genome accession   NZ_CP157287
Coordinates   1859255..1859956 (-) Length   233 a.a.
NCBI ID   WP_251906625.1    Uniprot ID   -
Organism   Lactococcus lactis strain BIM B-1834     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1854255..1864956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA22_RS09215 (ABKA22_09215) - 1854365..1855582 (-) 1218 WP_004255189.1 cysteine desulfurase -
  ABKA22_RS09220 (ABKA22_09220) sufD 1855582..1856838 (-) 1257 WP_010906140.1 Fe-S cluster assembly protein SufD -
  ABKA22_RS09225 (ABKA22_09225) sufC 1856976..1857746 (-) 771 WP_004255181.1 Fe-S cluster assembly ATPase SufC -
  ABKA22_RS09230 (ABKA22_09230) - 1857921..1859252 (-) 1332 WP_348618766.1 MraY family glycosyltransferase -
  ABKA22_RS09235 (ABKA22_09235) mecA 1859255..1859956 (-) 702 WP_251906625.1 adaptor protein MecA Regulator
  ABKA22_RS09240 (ABKA22_09240) - 1860086..1860820 (-) 735 WP_004255171.1 amino acid ABC transporter ATP-binding protein -
  ABKA22_RS09245 (ABKA22_09245) - 1860820..1861506 (-) 687 WP_004255158.1 amino acid ABC transporter permease -
  ABKA22_RS09250 (ABKA22_09250) - 1861654..1862562 (-) 909 WP_003130548.1 diacylglycerol kinase family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 27063.39 Da        Isoelectric Point: 4.0890

>NTDB_id=1005445 ABKA22_RS09235 WP_251906625.1 1859255..1859956(-) (mecA) [Lactococcus lactis strain BIM B-1834]
MKYEDINENTIKITLSFDDLTDYDINLSDFFGNQEVIEQFFYELVDELGLENRFGNVGMLTFQIQPFPQGVHMIVHEEAM
LGEGGEIPDDPEEFEELMTGFYNKLNEIGADMARERGITDFKPGLGLPGTKKDEAEQEPDFIYYSIRYEDIMSVLTGIKN
VKFADEESEFYRYDGNFYLVVLDNQKEKGKMHVESTRSRMMEYGEATKMSREFLQEYGECLIATRALDVLRKI

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1005445 ABKA22_RS09235 WP_251906625.1 1859255..1859956(-) (mecA) [Lactococcus lactis strain BIM B-1834]
ATGAAATATGAGGATATAAACGAAAATACTATAAAAATCACCTTGTCTTTTGATGATTTGACAGATTATGATATCAATTT
ATCAGACTTTTTCGGAAATCAAGAAGTCATTGAACAATTTTTCTATGAATTGGTTGATGAGCTTGGTTTAGAAAATCGCT
TTGGAAATGTGGGAATGTTAACTTTCCAAATCCAACCTTTTCCTCAAGGTGTTCATATGATTGTTCATGAAGAAGCGATG
CTAGGTGAAGGTGGAGAAATTCCAGATGACCCAGAAGAGTTTGAAGAATTGATGACTGGTTTTTATAATAAATTAAATGA
AATAGGGGCAGATATGGCGCGCGAGCGAGGAATTACTGATTTTAAACCTGGGCTTGGTTTACCAGGAACAAAAAAAGACG
AAGCTGAACAAGAGCCAGATTTTATTTATTACTCTATTCGTTATGAAGATATTATGTCTGTCTTAACAGGAATAAAAAAT
GTGAAGTTTGCTGATGAAGAATCAGAGTTTTATCGTTATGATGGCAATTTTTATCTTGTTGTTTTGGATAATCAAAAAGA
AAAAGGCAAGATGCATGTCGAAAGTACCCGTTCACGAATGATGGAATATGGGGAAGCAACAAAAATGAGTCGAGAATTTT
TGCAGGAGTATGGTGAATGTCTTATCGCGACACGTGCTTTAGATGTTCTTAGAAAAATCTAA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Lactococcus lactis subsp. lactis strain DGCC12653

99.142

100

0.991
  mecA Lactococcus lactis subsp. cremoris KW2

96.567

100

0.966

Multiple sequence alignment