Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   FGL06_RS02060 Genome accession   NZ_LR594042
Coordinates   387328..388059 (+) Length   243 a.a.
NCBI ID   WP_126437618.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8133     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 382328..393059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL06_RS02045 (NCTC8133_00409) - 384469..384726 (+) 258 WP_024344626.1 DUF896 family protein -
  FGL06_RS02050 (NCTC8133_00410) recP/tkt 384885..386870 (+) 1986 WP_126437617.1 transketolase Machinery gene
  FGL06_RS02055 (NCTC8133_00411) - 387013..387306 (+) 294 WP_027968129.1 bacteriocin immunity protein -
  FGL06_RS02060 (NCTC8133_00412) pptA 387328..388059 (+) 732 WP_126437618.1 ABC transporter ATP-binding protein Regulator
  FGL06_RS02065 (NCTC8133_00413) - 388064..389680 (+) 1617 WP_126437619.1 ABC transporter permease -
  FGL06_RS02070 (NCTC8133_00414) - 389740..391593 (-) 1854 WP_126437620.1 beta-glucoside-specific PTS transporter subunit IIABC -
  FGL06_RS02075 (NCTC8133_00415) - 391730..392599 (-) 870 WP_231997671.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27174.02 Da        Isoelectric Point: 4.5979

>NTDB_id=1005342 FGL06_RS02060 WP_126437618.1 387328..388059(+) (pptA) [Streptococcus equinus strain NCTC8133]
MIRFEHVSKLYGDKEALSDLNVTIENGEIFGLIGHNGAGKTTTISILTSIIEATYGEVFVDDLALSEHRDEIKKRIGYVP
DSPDLFLNLTASEYWHFLAKIYGVDEAKMEERIDRLSHLFDIAGHVDELIESFSHGMRQKVIVIGALISNPDIWILDEPL
TGLDPQAAFDLKEMMKEHARGGNTVLFSTHVLAVAEQLCDRIGILKEGKLIFVGSLEELKANHPDKDLETIYLELAGRKA
EEV

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1005342 FGL06_RS02060 WP_126437618.1 387328..388059(+) (pptA) [Streptococcus equinus strain NCTC8133]
ATGATTCGTTTTGAACATGTTTCAAAATTATATGGAGATAAGGAAGCACTTAGTGACCTTAATGTAACTATTGAGAACGG
TGAGATTTTTGGTCTTATTGGTCACAATGGTGCTGGGAAAACAACGACTATTAGTATTTTAACCTCAATTATTGAGGCTA
CTTACGGTGAGGTTTTTGTAGATGATTTGGCTTTGTCAGAACATCGTGATGAGATTAAAAAACGTATTGGTTATGTTCCT
GACTCACCAGATTTATTTTTGAATTTGACGGCGAGTGAGTACTGGCATTTCTTAGCAAAAATTTATGGTGTGGATGAAGC
AAAAATGGAAGAACGTATTGACCGTCTGTCACACTTATTTGATATTGCTGGGCATGTAGATGAATTGATTGAAAGTTTTT
CACATGGTATGCGTCAAAAAGTGATTGTCATCGGAGCTTTGATTTCAAATCCAGATATTTGGATTTTGGATGAACCATTG
ACAGGACTTGATCCACAAGCAGCTTTTGATTTGAAAGAGATGATGAAAGAGCATGCGCGTGGTGGCAATACAGTGCTTTT
CTCAACACACGTTTTGGCAGTTGCTGAACAATTGTGTGACCGCATTGGCATCTTAAAAGAAGGAAAATTGATTTTTGTTG
GTTCATTAGAAGAGTTGAAAGCAAATCATCCTGATAAAGATTTAGAAACGATTTACCTTGAACTTGCAGGACGTAAGGCA
GAAGAGGTGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

37.815

97.942

0.37
  pptA Streptococcus thermophilus LMD-9

36.975

97.942

0.362