Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   FGL06_RS02050 Genome accession   NZ_LR594042
Coordinates   384885..386870 (+) Length   661 a.a.
NCBI ID   WP_126437617.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 379885..391870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL06_RS02030 (NCTC8133_00405) nagA 379891..381039 (+) 1149 WP_126437615.1 N-acetylglucosamine-6-phosphate deacetylase -
  FGL06_RS02035 (NCTC8133_00407) glyQ 381390..382307 (+) 918 WP_006531137.1 glycine--tRNA ligase subunit alpha -
  FGL06_RS02040 (NCTC8133_00408) glyS 382307..384346 (+) 2040 WP_126437616.1 glycine--tRNA ligase subunit beta -
  FGL06_RS02045 (NCTC8133_00409) - 384469..384726 (+) 258 WP_024344626.1 DUF896 family protein -
  FGL06_RS02050 (NCTC8133_00410) recP/tkt 384885..386870 (+) 1986 WP_126437617.1 transketolase Machinery gene
  FGL06_RS02055 (NCTC8133_00411) - 387013..387306 (+) 294 WP_027968129.1 bacteriocin immunity protein -
  FGL06_RS02060 (NCTC8133_00412) pptA 387328..388059 (+) 732 WP_126437618.1 ABC transporter ATP-binding protein Regulator
  FGL06_RS02065 (NCTC8133_00413) - 388064..389680 (+) 1617 WP_126437619.1 ABC transporter permease -
  FGL06_RS02070 (NCTC8133_00414) - 389740..391593 (-) 1854 WP_126437620.1 beta-glucoside-specific PTS transporter subunit IIABC -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71306.38 Da        Isoelectric Point: 4.9541

>NTDB_id=1005341 FGL06_RS02050 WP_126437617.1 384885..386870(+) (recP/tkt) [Streptococcus equinus strain NCTC8133]
MTFDAIDQLAVNTVRTLSIDAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRSWSNRDRFVLSAGHGSALLYSLLH
LSGYDVTIDDLKNFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSKAFTEDIKGKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETE
KPSIIEVKTIIGFGAEKQGTSAVHGAPLGVDGIAYAKKSYGWEYPEFTVPEEVAKRFEVGIKFRGEAAQNAWETKFREYE
ATYPELAAEYKAAFANKPVDVKLEDFEIGTSLASRSSSQQAIQQISAQVPSFWGGSADLSASNNTMVKVESDFQPDNYLG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQQLPTVYVMTHDSIAVGEDGPTHEPVEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETNRPTMLVLTRQNLPVLEGTKELAEDGVNKGAYILSEAKGDLDGILIATGSEV
KLALDTQAALEAKGVHVRVVSMPAQNIFDEQDAAYKESILPSNVTKRLAIEAGSSFGWGKYVGLQGKTLTIDTWGASAPG
AKIFEEYGFTVDNAVSLFESL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=1005341 FGL06_RS02050 WP_126437617.1 384885..386870(+) (recP/tkt) [Streptococcus equinus strain NCTC8133]
ATGACATTTGATGCTATTGATCAATTGGCAGTTAACACTGTCCGCACGCTCTCAATTGATGCCATTCAGGCAGCCAATTC
TGGTCACCCAGGTCTTCCAATGGGAGCTGCACCTATGGCTTATGTTCTTTGGAATCATGTAATGAACGTTAATCCAAAAA
CAAGCCGCTCTTGGTCTAACCGAGACCGTTTCGTACTATCTGCAGGTCACGGTTCTGCACTTTTATATAGTCTTCTTCAC
CTATCAGGTTACGATGTGACTATTGATGATTTGAAAAACTTCCGTCAATGGGGTTCAAAAACACCAGGTCACCCAGAAGT
AAACCACACAGATGGTGTTGAAGCAACAACTGGCCCTCTTGGTCAAGGTATTGCTAATGCTGTTGGTATGGCAATGGCAG
AAGCTCACTTAGCTGCAAAATTCAACAAACCAGGTTTTGATATTGTTGACCACTATACATACGCTTTGCATGGTGATGGA
TGCTTGATGGAAGGTGTCAGCCAAGAAGCAGCAAGTCTTGCTGGTCACTTAAAACTTGGTAAATTGGTTCTTCTTTATGA
TTCAAATGACATCTCACTTGATGGTCCAACATCAAAAGCTTTCACAGAAGATATCAAAGGTAAATTTGAAGCTTACGGTT
GGCAACACATTCTAGTTAAAGATGGTAACGACCTTGAAGCAATTGCTAAAGCTATCGAAGAAGCAAAAGCTGAAACAGAA
AAACCATCTATCATTGAAGTTAAAACAATCATTGGTTTTGGTGCTGAAAAACAAGGTACATCAGCTGTTCACGGTGCACC
TCTTGGTGTTGACGGAATTGCTTACGCTAAAAAATCTTATGGTTGGGAATATCCAGAATTCACAGTTCCAGAAGAAGTTG
CAAAACGTTTCGAAGTTGGTATTAAATTCCGTGGTGAAGCTGCTCAAAACGCATGGGAAACTAAATTCCGTGAATACGAA
GCTACTTACCCAGAATTAGCTGCTGAATACAAAGCTGCATTTGCTAACAAACCAGTTGACGTAAAACTTGAAGACTTTGA
AATCGGAACTAGCCTTGCTAGCCGTTCATCAAGCCAACAAGCTATCCAACAAATCTCAGCACAAGTTCCATCATTCTGGG
GTGGTTCAGCTGACCTTTCTGCATCAAATAATACAATGGTCAAAGTAGAATCTGATTTCCAACCAGATAACTACCTTGGT
CGCAACATCTGGTTTGGTGTGCGTGAATTTGCCATGGCAGCTGCAATGAACGGTATTGCACTTCACGGTGGTACTCGTGT
TTACGGTGGTACATTCTTCGTATTCTCTAACTACCTACTTCCAGCTGTTCGTATGGCAGCTCTTCAACAATTACCAACTG
TTTATGTCATGACTCACGACTCAATCGCCGTTGGTGAAGATGGTCCAACTCACGAACCAGTTGAACAATTGGCTAGCGTT
CGTTCTATGCCAAACCTTAACGTTATTCGTCCAGCTGATGGTAACGAAACAAACGCTGCATGGAAACGTGCTCTTGCTGA
AACAAACCGTCCAACAATGCTTGTCTTGACTCGTCAAAATCTTCCTGTTCTTGAAGGAACAAAAGAATTGGCAGAAGATG
GTGTGAACAAAGGTGCTTACATCCTTTCAGAAGCTAAAGGTGACCTTGACGGTATCCTTATTGCTACTGGTTCTGAAGTG
AAATTGGCTCTTGATACTCAGGCAGCTTTGGAAGCTAAAGGTGTTCACGTTCGTGTGGTTTCAATGCCAGCACAAAACAT
CTTTGACGAACAAGATGCAGCTTACAAAGAAAGCATTCTTCCATCTAACGTTACAAAACGTTTGGCAATTGAAGCTGGCT
CAAGCTTTGGTTGGGGCAAATACGTTGGTCTCCAAGGTAAAACTCTTACAATCGATACTTGGGGAGCTTCTGCACCAGGT
GCTAAAATCTTTGAAGAATATGGATTCACAGTCGATAACGCTGTTAGCCTTTTCGAATCTTTATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

57.143

99.546

0.569