Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   FGL06_RS01895 Genome accession   NZ_LR594042
Coordinates   355403..356437 (+) Length   344 a.a.
NCBI ID   WP_126437607.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8133     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 350403..361437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL06_RS01865 (NCTC8133_00372) tsaE 351684..352127 (+) 444 WP_024344600.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  FGL06_RS01870 (NCTC8133_00373) - 352120..352632 (+) 513 WP_126437605.1 GNAT family N-acetyltransferase -
  FGL06_RS01875 (NCTC8133_00374) brpA 352643..353809 (+) 1167 WP_126437606.1 biofilm formation/cell division transcriptional regulator BrpA -
  FGL06_RS01880 (NCTC8133_00375) - 353881..354195 (-) 315 WP_021141714.1 hypothetical protein -
  FGL06_RS01885 (NCTC8133_00376) - 354192..354611 (-) 420 WP_021141715.1 HIT family protein -
  FGL06_RS01890 (NCTC8133_00377) pptA 354675..355400 (+) 726 WP_039691903.1 ABC transporter ATP-binding protein Regulator
  FGL06_RS01895 (NCTC8133_00378) pptB 355403..356437 (+) 1035 WP_126437607.1 ABC transporter permease Regulator
  FGL06_RS01900 (NCTC8133_00379) ccrZ 356471..357304 (+) 834 WP_045798213.1 cell cycle regulator CcrZ -
  FGL06_RS01905 (NCTC8133_00380) trmB 357304..357942 (+) 639 WP_021141720.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FGL06_RS01910 (NCTC8133_00381) - 358244..358720 (+) 477 WP_186330474.1 hypothetical protein -
  FGL06_RS01915 (NCTC8133_00382) - 358662..359600 (+) 939 Protein_324 hypothetical protein -
  FGL06_RS01920 (NCTC8133_00383) rimP 359807..360304 (+) 498 WP_024344612.1 ribosome maturation factor RimP -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40042.60 Da        Isoelectric Point: 10.4266

>NTDB_id=1005340 FGL06_RS01895 WP_126437607.1 355403..356437(+) (pptB) [Streptococcus equinus strain NCTC8133]
MKEVFQKRRRLFLGQCLKYLRYVLNDHFVLVLFFLLGFLMFQYGKLLQHFPKNVIWLEIILAFVALAMLSLGKIATYIEA
PDKLFYLPKEEEVVSLIHQARIRSFGIWTVIQTVVMILLAPIFFKLGMSLAIFIVLVIVLAILKWFVMTEKEKVFFKDGH
FSWEAAIRYESKRRQGILKFFALFTTVKGISASVKRRAYLDKLLLLVKKTHAKTWSNLYLRAFLRSSDYLALTLRLSLLS
ILALLFIPNHLVAAGLALVFNYLLLFQLLSLAQHFDYQYLTRLYPISETQKKANLKAFLRCLSYLISLIELVLCFSLKAA
GLIILVTVIVTEWYLPYKIAKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1005340 FGL06_RS01895 WP_126437607.1 355403..356437(+) (pptB) [Streptococcus equinus strain NCTC8133]
ATGAAAGAAGTTTTTCAAAAACGACGTCGCCTCTTTTTAGGGCAATGTCTAAAGTATTTACGATATGTCTTAAATGACCA
TTTTGTTTTAGTGCTGTTTTTCTTGCTTGGATTTTTGATGTTTCAGTATGGAAAATTATTGCAGCATTTTCCCAAAAATG
TCATTTGGCTAGAAATTATTTTAGCTTTTGTGGCGCTTGCTATGCTTAGCCTTGGAAAAATTGCGACTTACATTGAGGCA
CCGGATAAGTTGTTTTATCTTCCTAAGGAAGAAGAAGTTGTAAGCCTGATTCATCAAGCACGCATTCGTTCATTTGGTAT
TTGGACGGTGATTCAGACAGTTGTGATGATTTTGCTAGCACCGATTTTCTTTAAATTGGGAATGTCACTAGCTATTTTTA
TTGTGTTGGTGATTGTTTTAGCGATTCTGAAATGGTTTGTGATGACAGAAAAGGAAAAAGTCTTTTTTAAAGATGGACAT
TTTTCATGGGAAGCTGCTATTCGTTATGAGTCAAAACGTCGTCAAGGAATCTTGAAGTTCTTTGCTCTCTTTACAACTGT
TAAAGGCATTTCAGCTAGTGTAAAACGTCGTGCCTATCTTGATAAATTGCTACTTTTAGTTAAGAAGACACATGCTAAAA
CGTGGTCAAACTTGTACCTTCGTGCTTTTCTTCGCAGCTCGGATTATTTAGCGTTAACTTTGCGTTTATCACTACTAAGT
ATTTTAGCTTTGCTATTTATTCCAAATCATTTAGTAGCAGCAGGTCTTGCACTTGTTTTTAACTACCTTTTACTCTTTCA
GCTATTGAGTTTAGCCCAACATTTTGATTATCAATATTTAACACGTTTATACCCAATATCAGAAACACAGAAAAAGGCTA
ATCTAAAGGCATTTTTGAGATGTTTATCTTATTTGATTAGTTTAATTGAGCTTGTTTTATGCTTCTCATTGAAAGCAGCA
GGTCTTATCATTTTAGTGACTGTAATTGTTACAGAATGGTATCTTCCTTACAAAATCGCGAAGATGATTGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.957

100

0.471

  pptB Streptococcus salivarius strain HSISS4

45.217

100

0.453


Multiple sequence alignment