Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABI173_RS11005 | Genome accession | NZ_CP157257 |
| Coordinates | 2242530..2242910 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 2024CK-00462 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2237530..2247910
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABI173_RS10975 (ABI173_10975) | tadA | 2237648..2238151 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| ABI173_RS10980 (ABI173_10980) | - | 2238158..2239282 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABI173_RS10985 (ABI173_10985) | ung | 2239279..2239992 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABI173_RS10990 (ABI173_10990) | - | 2240043..2240639 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABI173_RS10995 (ABI173_10995) | gspK | 2240870..2241829 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABI173_RS11000 (ABI173_11000) | xcpW | 2241829..2242530 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABI173_RS11005 (ABI173_11005) | xcpV | 2242530..2242910 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABI173_RS11010 (ABI173_11010) | - | 2242900..2243454 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABI173_RS11015 (ABI173_11015) | - | 2243464..2244072 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABI173_RS11020 (ABI173_11020) | - | 2244110..2244883 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABI173_RS11025 (ABI173_11025) | - | 2244901..2245242 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABI173_RS11030 (ABI173_11030) | - | 2245254..2246234 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABI173_RS11035 (ABI173_11035) | kdsB | 2246246..2247007 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1005219 ABI173_RS11005 WP_000836911.1 2242530..2242910(-) (xcpV) [Acinetobacter baumannii strain 2024CK-00462]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1005219 ABI173_RS11005 WP_000836911.1 2242530..2242910(-) (xcpV) [Acinetobacter baumannii strain 2024CK-00462]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |