Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABI173_RS01585 Genome accession   NZ_CP157257
Coordinates   329221..329862 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain 2024CK-00462     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324221..334862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI173_RS01565 (ABI173_01565) ponA 324559..326325 (-) 1767 Protein_299 penicillin-binding protein PBP1a -
  ABI173_RS01570 (ABI173_01570) - 326364..327186 (+) 823 WP_076611894.1 IS5-like element ISAba27 family transposase -
  ABI173_RS01575 (ABI173_01575) ponA 327206..328000 (-) 795 Protein_301 penicillin-binding protein PBP1a -
  ABI173_RS01580 (ABI173_01580) pilM 328163..329221 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ABI173_RS01585 (ABI173_01585) pilN 329221..329862 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ABI173_RS01590 (ABI173_01590) pilO 329859..330599 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABI173_RS01595 (ABI173_01595) pilP 330610..331137 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABI173_RS01600 (ABI173_01600) pilQ 331205..333370 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABI173_RS01605 (ABI173_01605) aroK 333382..333951 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=1005198 ABI173_RS01585 WP_000201227.1 329221..329862(+) (pilN) [Acinetobacter baumannii strain 2024CK-00462]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1005198 ABI173_RS01585 WP_000201227.1 329221..329862(+) (pilN) [Acinetobacter baumannii strain 2024CK-00462]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment