Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABI139_RS09925 | Genome accession | NZ_CP157255 |
| Coordinates | 2108836..2109216 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 2024CK-00452 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2103836..2114216
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABI139_RS09895 (ABI139_09895) | tadA | 2103954..2104457 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| ABI139_RS09900 (ABI139_09900) | - | 2104464..2105588 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABI139_RS09905 (ABI139_09905) | ung | 2105585..2106298 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABI139_RS09910 (ABI139_09910) | - | 2106349..2106945 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABI139_RS09915 (ABI139_09915) | gspK | 2107176..2108135 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABI139_RS09920 (ABI139_09920) | xcpW | 2108135..2108836 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABI139_RS09925 (ABI139_09925) | xcpV | 2108836..2109216 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABI139_RS09930 (ABI139_09930) | - | 2109206..2109760 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABI139_RS09935 (ABI139_09935) | - | 2109770..2110378 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABI139_RS09940 (ABI139_09940) | - | 2110416..2111189 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABI139_RS09945 (ABI139_09945) | - | 2111207..2111548 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABI139_RS09950 (ABI139_09950) | - | 2111560..2112540 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABI139_RS09955 (ABI139_09955) | kdsB | 2112552..2113313 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1005171 ABI139_RS09925 WP_000836911.1 2108836..2109216(-) (xcpV) [Acinetobacter baumannii strain 2024CK-00452]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1005171 ABI139_RS09925 WP_000836911.1 2108836..2109216(-) (xcpV) [Acinetobacter baumannii strain 2024CK-00452]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |