Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   FGL04_RS04345 Genome accession   NZ_LR594035
Coordinates   802755..806408 (+) Length   1217 a.a.
NCBI ID   WP_138068333.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 797755..811408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS04330 (NCTC5385_00938) - 798002..798376 (+) 375 WP_138068330.1 OsmC family protein -
  FGL04_RS04335 (NCTC5385_00939) - 798429..799346 (-) 918 WP_138068331.1 neutral zinc metallopeptidase -
  FGL04_RS04340 (NCTC5385_00940) rexB 799517..802753 (+) 3237 WP_138068332.1 ATP-dependent nuclease subunit B Machinery gene
  FGL04_RS04345 (NCTC5385_00941) rexA 802755..806408 (+) 3654 WP_138068333.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FGL04_RS04350 (NCTC5385_00942) rpsU 806589..806765 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  FGL04_RS04355 (NCTC5385_00943) mscL 806855..807232 (-) 378 WP_138068334.1 large conductance mechanosensitive channel protein MscL -
  FGL04_RS04360 (NCTC5385_00944) dnaG 807359..809167 (+) 1809 WP_138068335.1 DNA primase -
  FGL04_RS04365 (NCTC5385_00945) rpoD 809176..810285 (+) 1110 WP_003084376.1 RNA polymerase sigma factor RpoD -
  FGL04_RS04370 (NCTC5385_00946) - 810580..810918 (+) 339 WP_007894093.1 metal-sulfur cluster assembly factor -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 139950.54 Da        Isoelectric Point: 5.6898

>NTDB_id=1005035 FGL04_RS04345 WP_138068333.1 802755..806408(+) (rexA) [Streptococcus pseudoporcinus strain NCTC5385]
MIFPQFLSDKDIKKLQEKEAESNKAQKRTPEQIEAIYCNGQNILVSASAGSGKTFVMVERIIDKVMRGIAIDEMFISTFT
VKAATELKERLEKRLLALIKESSDAEWKAYLNQQLQGISQADIGTMDAFTQKLLSQYSYTLGISPKFRIMQNKSEQDILK
NRIYESIFANYMDSKESLTFMKTVKNFSGHRKDSKGFRAIVYKIYDFSQSTEYPLEWLEKIFLKASNSYTDFGSLPDTDI
EALLQSMQRTATSLHDLTELEDYGQLTKAGKPSAKYQKHLQMIQLLQEWSLHFDTYYGKEQISQLARDVLALLPTGDAVT
INKRKYSVFKDLQARLKDVQHLETIFTFQAETLPLLKLLQAFVLDFSKAYLKAKIEENAFEFSDVAHFAIAILENNPEIQ
VSYQDKYHEVMVDEYQDNNHIQEKLLELLSNGHNHFMVGDIKQSIYRFRQADPLIFNQKFKDYQENPENGRLILLKENFR
SQSEVLAVTNAVFSHLMDEAVGDILYDTSHRLLPGSSCQEESFPENRCQLLLYNTDSQDQSQQPDSSEMLSDNQVSPGEV
KIVAKEIIRLHNDEQVAFSDITLLVSSRTRNDNILRTFNRLGIPLVSDGGLDHYLQSVEIMVMLDTLRTINNPLNDYALV
ALLKSPMFAFDEDQLARIALQESRQDKVESFYEKIQNALSKQGLYPDLVTNDLQESLIRFDKILKQWRLFAKRNSLYDLI
WKIYNDRFYFDYVATSPKAEQAQANLYALALRASQFEKTGYRGLSRFISMIDRILETENDLADVDIVQAKDAVNLMTIHK
SKGLEFKYVFILNCDKKFSFKDLYAPAILDRHQGIGIKYLADFKTLLDAEQLSSLKVTLETLPYQMNRKALKRATLSEQM
RLLYVAMTRAEKKLYLIGKGSQEKLADKYDGQREGNHLPRTVRENLQSFQDWFLAIRESFAQEELYFDLRFESDSDLGDD
AIGQLVVKEVLDPDNLAHNRQSDHIARALDMLEKVNQLNQSYHAAIHLPTVQTPSQLKDFYQPIMDSEGVAVIEKSRPLS
QASFVLPNFSENPTIDASQIGSSLHELMQKITISERVTQESVRKALTLVNASESLKAKLDLDKIIQFFNQTTLGQLICNH
HQKLHREAPFAMLKKDMLSQEKFVVRGIIDGYLLFKDKIILFDYKTDKYHQASELERRYAGQLALYAEALSQAYNIDTVE
KYLVLLGGEDLEVVSVL

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=1005035 FGL04_RS04345 WP_138068333.1 802755..806408(+) (rexA) [Streptococcus pseudoporcinus strain NCTC5385]
ATGATCTTTCCACAATTTTTAAGTGACAAGGACATTAAGAAACTACAAGAAAAAGAAGCTGAATCTAATAAAGCACAAAA
ACGGACGCCTGAGCAAATTGAAGCAATCTATTGTAATGGACAGAATATCCTAGTTTCTGCATCAGCTGGTTCAGGGAAAA
CTTTTGTTATGGTTGAACGGATTATTGATAAGGTCATGCGTGGTATTGCCATTGATGAAATGTTCATATCTACTTTTACA
GTCAAAGCCGCTACGGAGCTAAAAGAACGCCTGGAAAAGAGACTCTTAGCCTTGATCAAAGAAAGCAGTGATGCCGAATG
GAAGGCTTATTTGAATCAGCAATTACAAGGAATTTCTCAAGCAGATATTGGTACCATGGACGCCTTTACCCAAAAGCTCT
TGTCCCAATATAGCTACACTTTAGGTATCTCACCAAAGTTTCGAATCATGCAGAATAAGTCGGAACAAGATATCCTCAAA
AACAGAATTTATGAATCAATTTTTGCTAACTATATGGATTCAAAAGAGAGTTTGACCTTTATGAAAACAGTCAAAAATTT
CTCTGGACATCGAAAAGATTCTAAAGGGTTTCGAGCAATTGTCTATAAGATTTATGATTTTAGCCAATCGACCGAATATC
CTTTGGAATGGTTAGAGAAAATTTTTCTAAAGGCCAGTAACAGTTATACTGATTTTGGTAGTTTGCCAGATACTGATATA
GAAGCTTTGCTCCAAAGCATGCAAAGAACAGCAACTAGTTTACATGATCTGACAGAATTAGAAGATTACGGACAACTGAC
AAAAGCAGGAAAACCTAGTGCTAAATACCAAAAGCATCTACAGATGATCCAATTACTGCAAGAATGGTCCCTCCACTTTG
ACACTTACTATGGCAAAGAACAGATTAGTCAATTAGCTAGAGATGTTTTGGCACTTTTGCCAACTGGTGATGCTGTGACG
ATCAATAAGCGAAAATATAGTGTTTTTAAAGACTTACAAGCGCGCCTAAAAGATGTGCAGCATTTGGAAACTATTTTTAC
TTTTCAAGCAGAAACCTTACCATTATTAAAACTTTTACAAGCTTTTGTCCTTGATTTCAGCAAAGCTTATTTAAAAGCAA
AAATAGAAGAGAATGCTTTTGAATTTTCTGATGTTGCTCATTTTGCCATTGCTATATTGGAAAATAATCCTGAGATTCAA
GTGTCTTATCAGGACAAATATCATGAAGTTATGGTTGATGAGTATCAGGACAATAACCATATTCAAGAAAAACTCTTGGA
ATTATTGTCAAATGGTCACAATCATTTTATGGTAGGAGATATTAAACAGTCAATCTACCGTTTTAGACAAGCAGATCCGC
TTATTTTTAACCAAAAGTTTAAAGATTATCAAGAAAACCCGGAAAATGGCAGACTGATTCTATTGAAAGAGAATTTCCGG
AGTCAGTCAGAAGTCTTGGCGGTCACCAATGCAGTATTTTCTCATTTAATGGACGAAGCAGTTGGCGATATTCTTTATGA
TACTAGCCATCGTTTATTACCTGGTAGTTCTTGTCAAGAAGAAAGCTTCCCAGAAAATAGATGTCAACTGTTACTATACA
ATACCGACAGTCAAGATCAGAGTCAGCAGCCAGATTCTAGTGAGATGCTTAGTGATAATCAAGTCTCACCTGGTGAGGTC
AAAATTGTTGCTAAAGAAATTATTCGTCTTCATAATGACGAGCAAGTAGCTTTTTCGGATATTACGCTCTTGGTTTCGTC
TCGAACGCGAAATGATAATATCTTGCGAACCTTTAATCGTTTGGGGATTCCCTTAGTGTCTGATGGTGGCCTAGATCATT
ATCTGCAATCAGTAGAAATAATGGTCATGCTAGATACCTTGAGGACGATTAATAATCCCCTTAATGATTACGCCCTTGTG
GCCTTACTTAAATCCCCAATGTTTGCCTTTGATGAGGACCAGTTAGCACGAATAGCTTTACAGGAATCTAGGCAAGACAA
AGTGGAAAGTTTCTATGAGAAGATTCAAAACGCTTTATCCAAGCAAGGTCTTTATCCAGACTTAGTAACCAACGACTTAC
AAGAGAGTCTAATAAGATTTGACAAGATTTTAAAGCAATGGCGACTTTTTGCGAAGAGGAATAGTTTGTATGATTTAATT
TGGAAAATCTATAATGATCGTTTTTACTTTGATTATGTGGCTACCAGTCCTAAGGCAGAACAGGCGCAAGCTAACCTATA
TGCTCTAGCATTAAGGGCCAGTCAATTTGAAAAGACAGGTTATAGAGGTTTGTCGCGCTTTATCTCCATGATCGATAGGA
TTTTAGAAACGGAAAATGACCTGGCTGATGTTGATATTGTTCAGGCTAAAGATGCTGTCAATTTGATGACGATTCATAAA
TCGAAGGGGTTAGAATTCAAGTATGTGTTTATATTAAACTGTGATAAAAAGTTTAGTTTTAAGGATTTATACGCGCCAGC
TATTCTTGACCGTCATCAGGGGATAGGCATTAAATATTTAGCTGATTTTAAAACTCTTTTGGATGCAGAGCAATTATCAA
GCTTAAAGGTTACTTTAGAAACGCTTCCTTATCAGATGAATAGAAAAGCCTTGAAGCGAGCTACTCTTTCAGAGCAGATG
CGCCTGCTTTACGTTGCGATGACTAGGGCTGAAAAGAAGCTATATTTGATTGGTAAGGGAAGTCAAGAGAAGTTAGCTGA
TAAGTATGATGGGCAAAGAGAAGGAAATCATTTGCCTAGGACAGTGCGTGAAAATCTCCAAAGTTTCCAAGATTGGTTTT
TAGCTATTCGAGAAAGTTTTGCCCAAGAAGAACTTTATTTTGATCTCCGTTTTGAAAGTGATAGTGATTTAGGAGATGAC
GCTATTGGCCAATTAGTCGTAAAAGAGGTTTTAGATCCTGATAATTTGGCCCATAATAGACAATCTGACCATATTGCGCG
TGCTTTAGATATGTTAGAAAAAGTTAATCAGTTAAACCAGTCTTATCATGCAGCTATTCATTTACCAACAGTTCAAACAC
CGAGTCAGCTTAAAGACTTTTATCAGCCAATTATGGACTCTGAAGGAGTCGCTGTTATAGAAAAAAGCCGACCTTTGAGT
CAAGCATCGTTTGTCTTACCAAATTTTAGTGAAAATCCTACTATTGATGCTAGCCAAATTGGATCAAGCTTACATGAATT
GATGCAAAAAATCACGATTTCAGAAAGAGTGACACAAGAAAGTGTTCGAAAGGCTTTGACCCTGGTTAATGCTAGTGAGT
CCCTTAAAGCTAAGCTTGATCTTGACAAGATTATTCAGTTCTTCAACCAGACTACCCTTGGTCAACTAATCTGTAATCAC
CATCAGAAGCTCCATCGTGAAGCGCCGTTTGCTATGCTCAAAAAGGACATGCTTAGTCAAGAAAAGTTTGTGGTTCGTGG
CATTATTGATGGTTACTTGCTGTTTAAGGATAAAATTATTCTCTTTGATTACAAGACTGATAAATATCACCAGGCAAGTG
AGCTAGAGAGAAGGTATGCAGGTCAACTAGCCTTATATGCAGAAGCTTTGTCACAAGCTTATAATATTGACACTGTCGAA
AAGTATCTTGTTTTATTGGGAGGAGAAGATCTAGAAGTGGTTTCTGTCTTGTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1051-1193)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-897)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.525

100

0.514

Multiple sequence alignment