Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   FGL04_RS04340 Genome accession   NZ_LR594035
Coordinates   799517..802753 (+) Length   1078 a.a.
NCBI ID   WP_138068332.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 794517..807753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS04320 (NCTC5385_00936) - 794967..795491 (+) 525 WP_138068328.1 GNAT family N-acetyltransferase -
  FGL04_RS04325 (NCTC5385_00937) pheT 795506..797911 (+) 2406 WP_138068329.1 phenylalanine--tRNA ligase subunit beta -
  FGL04_RS04330 (NCTC5385_00938) - 798002..798376 (+) 375 WP_138068330.1 OsmC family protein -
  FGL04_RS04335 (NCTC5385_00939) - 798429..799346 (-) 918 WP_138068331.1 neutral zinc metallopeptidase -
  FGL04_RS04340 (NCTC5385_00940) rexB 799517..802753 (+) 3237 WP_138068332.1 ATP-dependent nuclease subunit B Machinery gene
  FGL04_RS04345 (NCTC5385_00941) rexA 802755..806408 (+) 3654 WP_138068333.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FGL04_RS04350 (NCTC5385_00942) rpsU 806589..806765 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  FGL04_RS04355 (NCTC5385_00943) mscL 806855..807232 (-) 378 WP_138068334.1 large conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 1078 a.a.        Molecular weight: 124957.09 Da        Isoelectric Point: 5.3418

>NTDB_id=1005034 FGL04_RS04340 WP_138068332.1 799517..802753(+) (rexB) [Streptococcus pseudoporcinus strain NCTC5385]
MKLLYTDLHYSLTELLVAQADNYAQEWYRVFYIAPNSLSFEKERDVLKALRQEASFAITVTRFGQLARYFTLNKVKTSLP
IDDMTLSMIFYRALDQLTASDLKRYYHLKGDLAFILQLIDLYKELKGANIAVTELEMEDPEKKNDFISIFLAVEDLMARY
QLDETSSLEQFSQVIASSQIDDQLSQTVLIIDGFTRFSTEEANLVAQLDAKCHQVVIGTYLSSKAYSKNFTEGNIYQASI
DFFRELSQTYGVKAQYVKGQTIYPESFQKLTKLLEEHFDFSESENQLSSQDKESFQIWQSLNQKDEIEHVAKSIRQKLYE
GYRYKDILVLLGDLESYQLQIGQLFDKYEIPYYFGKAEAMSHHPLVQFIDALERIYGYNWRNEDILSLLKTGLFSHFEDF
DLDQFEAYVQFADINGSRKFAKPFSLNPLDHRDRRKFDLEIINRVREVIYSPLRELYSQKEQTGASFLTGLLNFLKQVEL
PAKLEQLSYSQNENEQEKDLEVWKVFTTILEQFHHIFKDDIISLEHAFNLIKMGMQAANYRAVPATLDVVTIKSYDLVQP
HSKAFVYAIGMTSAHFPKVTLKKSLISDQERALTNQKLSSFQRFEVASYETTKKNHFMALSLFNSANQELVLSVPMQLNE
VSVELSPYISLLLDFGIPLLEKGKSQFSAMETDIGNYKSLLSQVIELNTSQIELSSEEENFWTVMLRYLKGRLAKEDLVL
PQVKKHLQTKPLSQEVIQTRFPQEKPILLSHSALTVFYDNQYKYFLQYILGLQEMESIHPDARQHGTYLHRVFERVMADA
TDLAFDDKVKRAIEQTNQESSFKYFYQDDAQGRYSLHLLEGIAKATADIFKTHQNVHVLAQEEKFQFPIKDKLIIKGTID
RIDQLVDQSVGIVDYKSSASAFDLSLFFNGLNSQLPTYLSALKRHYQNHIPIFGAMYLHMQEPTLDLAIYPELDSKLLKD
HYKELTYKGIFMESEKEYLASGAYHITNNTFTEEEVAVLLAYNEWLYLRAEEKIRQGHFLINPYTKDGKSIQGDQLKAIT
GFEADLDFGQARSLVTVFGKNKKETLLELMKDRQEGNQ

Nucleotide


Download         Length: 3237 bp        

>NTDB_id=1005034 FGL04_RS04340 WP_138068332.1 799517..802753(+) (rexB) [Streptococcus pseudoporcinus strain NCTC5385]
ATGAAATTACTTTATACAGATTTGCACTATTCTTTAACAGAACTTTTAGTTGCTCAGGCCGATAACTATGCCCAAGAATG
GTATCGTGTTTTTTATATCGCACCAAATTCTCTTTCATTTGAGAAAGAAAGAGATGTTTTAAAAGCTCTCAGGCAAGAAG
CTTCATTTGCCATTACAGTAACTCGATTTGGCCAGTTGGCTCGTTATTTTACGCTAAATAAGGTTAAAACAAGTTTGCCA
ATTGATGATATGACTTTATCAATGATTTTTTACCGTGCTTTAGACCAATTAACAGCATCTGATTTAAAGCGTTATTATCA
TCTAAAGGGGGATTTAGCATTTATACTGCAATTGATTGATTTATATAAAGAGCTTAAAGGGGCAAATATTGCAGTAACAG
AACTTGAAATGGAAGACCCTGAAAAGAAGAATGATTTTATCTCAATTTTTCTTGCTGTTGAAGACTTAATGGCGAGATAT
CAGCTTGATGAGACAAGTTCTCTTGAACAGTTTTCTCAAGTCATAGCAAGCAGCCAAATAGATGACCAGCTTAGTCAGAC
CGTTCTTATTATTGACGGTTTTACTCGTTTCTCCACTGAAGAAGCTAATTTAGTTGCGCAACTAGATGCTAAATGTCATC
AGGTTGTCATTGGCACTTATCTTAGCTCAAAGGCTTATTCTAAGAACTTTACCGAAGGAAATATTTATCAAGCAAGTATT
GATTTTTTTCGTGAACTTTCTCAAACTTATGGGGTTAAGGCACAATATGTGAAGGGTCAGACAATATATCCTGAGAGTTT
CCAAAAGCTTACCAAGCTTTTAGAGGAGCATTTTGATTTTTCTGAATCAGAGAACCAGTTAAGTTCACAGGATAAAGAGT
CCTTCCAAATTTGGCAAAGTCTCAATCAGAAAGATGAAATTGAGCATGTGGCAAAGAGCATCCGTCAGAAACTCTATGAA
GGTTATCGTTATAAGGATATCCTTGTTTTATTAGGTGATCTTGAAAGTTACCAGTTACAGATTGGTCAACTCTTTGACAA
ATACGAAATCCCTTATTATTTTGGTAAGGCAGAAGCCATGTCTCATCATCCTCTGGTGCAATTTATAGACGCACTTGAGC
GTATTTATGGCTATAATTGGCGAAACGAGGATATCTTGTCCCTATTAAAAACAGGTTTATTTAGCCATTTTGAAGATTTT
GATCTAGACCAATTTGAAGCCTATGTCCAATTCGCTGATATCAACGGTTCTCGCAAGTTTGCTAAACCCTTTTCTTTGAA
CCCGCTAGATCATCGCGACCGTCGCAAATTTGACCTTGAGATTATAAATAGGGTTCGAGAAGTTATTTATAGCCCACTAA
GAGAATTATATAGTCAAAAAGAACAAACAGGCGCAAGCTTTTTGACAGGCTTGTTAAACTTTTTAAAGCAAGTTGAGTTA
CCGGCAAAGCTTGAGCAGCTTAGCTATTCTCAAAATGAAAATGAGCAAGAAAAAGATTTGGAAGTCTGGAAAGTTTTTAC
CACTATTTTAGAGCAATTTCACCACATTTTCAAAGATGATATCATTAGTTTAGAACATGCTTTTAACCTTATTAAAATGG
GAATGCAGGCAGCTAATTATCGGGCGGTGCCAGCAACTTTAGATGTCGTTACGATCAAATCCTATGACTTAGTTCAACCG
CATAGTAAGGCCTTTGTCTATGCTATTGGGATGACTAGTGCCCATTTTCCAAAAGTTACTCTTAAGAAAAGTTTAATAAG
TGATCAAGAACGTGCTTTAACCAATCAAAAATTATCTTCTTTCCAGCGATTTGAAGTCGCTAGCTATGAAACAACTAAAA
AGAATCATTTTATGGCACTTTCGCTTTTTAATTCTGCAAATCAAGAATTAGTGCTTAGTGTCCCAATGCAATTAAACGAG
GTATCAGTAGAGCTATCACCTTATATTTCGTTACTGCTAGATTTTGGCATTCCTTTACTTGAAAAAGGAAAAAGCCAATT
TTCTGCTATGGAGACTGACATTGGAAATTATAAATCACTTTTATCTCAAGTGATTGAACTAAATACTAGCCAGATAGAAC
TCAGCTCAGAAGAGGAAAATTTTTGGACGGTTATGTTACGTTATCTTAAAGGACGTTTGGCGAAAGAAGACTTGGTATTG
CCTCAAGTTAAAAAACATTTACAAACTAAACCTCTATCACAAGAAGTCATTCAAACCCGATTTCCGCAAGAAAAACCTAT
CCTTTTATCTCATTCAGCCTTAACCGTTTTTTATGATAATCAGTATAAATATTTTCTACAATATATTTTAGGTTTGCAAG
AAATGGAGTCGATCCATCCAGATGCACGTCAACATGGAACTTATTTACACCGTGTGTTTGAACGTGTAATGGCAGATGCT
ACAGATCTAGCTTTTGATGATAAAGTTAAAAGGGCAATTGAACAGACAAATCAGGAATCAAGTTTCAAATATTTTTACCA
AGATGACGCACAAGGACGCTATAGTCTTCATCTTTTAGAAGGAATTGCCAAAGCGACTGCAGATATTTTTAAGACCCATC
AAAATGTTCATGTCTTAGCGCAGGAAGAAAAGTTTCAGTTTCCAATTAAGGACAAGTTAATAATTAAGGGAACGATAGAT
CGGATTGATCAGCTGGTTGATCAGAGTGTAGGCATAGTAGATTATAAGTCAAGTGCTAGTGCTTTTGATTTGTCCCTCTT
TTTCAATGGTTTAAACTCGCAGTTGCCTACTTATTTGTCAGCTCTAAAAAGGCACTATCAAAATCATATTCCTATTTTTG
GTGCGATGTATTTGCATATGCAAGAGCCAACACTTGATTTGGCAATCTATCCAGAGTTGGATAGTAAACTATTGAAAGAC
CACTATAAAGAGCTCACCTACAAAGGTATTTTTATGGAAAGTGAAAAAGAGTATTTAGCTTCTGGGGCCTACCATATTAC
CAACAATACTTTCACTGAAGAAGAAGTGGCTGTCTTGTTAGCCTATAACGAGTGGTTATATTTAAGGGCTGAAGAAAAAA
TTCGTCAGGGGCATTTTCTCATTAATCCTTACACTAAGGACGGCAAATCCATTCAGGGGGATCAATTGAAGGCCATAACT
GGCTTTGAGGCTGATTTGGATTTCGGACAAGCAAGGTCCTTAGTAACTGTTTTTGGAAAAAACAAAAAAGAAACGTTATT
AGAATTAATGAAAGACAGACAGGAAGGTAACCAGTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(749-1025)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

40.672

99.443

0.404