Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AABA75_RS00110 Genome accession   NZ_AP027272
Coordinates   27493..27663 (+) Length   56 a.a.
NCBI ID   WP_338290268.1    Uniprot ID   -
Organism   Planctobacterium marinum strain Dej080120_11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 22493..32663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA75_RS00090 (MACH26_00180) fmt 23761..24711 (-) 951 WP_338294772.1 methionyl-tRNA formyltransferase -
  AABA75_RS00095 (MACH26_00190) def 24735..25244 (-) 510 WP_338290265.1 peptide deformylase -
  AABA75_RS00100 (MACH26_00200) - 25396..26460 (+) 1065 WP_338290266.1 LysM domain-containing protein -
  AABA75_RS00105 (MACH26_00210) dprA 26513..27514 (+) 1002 WP_338290267.1 DNA-processing protein DprA -
  AABA75_RS00110 dprA 27493..27663 (+) 171 WP_338290268.1 hypothetical protein Machinery gene
  AABA75_RS00115 (MACH26_00220) - 27669..28145 (+) 477 WP_338290269.1 DUF494 family protein -
  AABA75_RS00120 - 28183..28743 (+) 561 WP_338290270.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  AABA75_RS00125 (MACH26_00230) - 28820..29392 (+) 573 WP_338290272.1 Sua5/YciO/YrdC/YwlC family protein -
  AABA75_RS00130 (MACH26_00240) hemF 29395..30330 (+) 936 WP_338290273.1 oxygen-dependent coproporphyrinogen oxidase -
  AABA75_RS00135 (MACH26_00250) aroE 30327..31136 (+) 810 WP_338290274.1 shikimate dehydrogenase -
  AABA75_RS00140 (MACH26_00260) - 31147..31689 (-) 543 WP_338290276.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 56 a.a.        Molecular weight: 5905.80 Da        Isoelectric Point: 4.2193

>NTDB_id=100498 AABA75_RS00110 WP_338290268.1 27493..27663(+) (dprA) [Planctobacterium marinum strain Dej080120_11]
MATDRLLASVGFEATSIDVVAQRSGLPVTAVISELLEYELRGLVATVPGGYIRLGE

Nucleotide


Download         Length: 171 bp        

>NTDB_id=100498 AABA75_RS00110 WP_338290268.1 27493..27663(+) (dprA) [Planctobacterium marinum strain Dej080120_11]
TTGGCAACCGACAGATTGTTAGCTAGTGTTGGGTTTGAAGCAACATCAATAGATGTTGTAGCGCAACGTAGTGGTCTGCC
AGTGACGGCGGTGATATCAGAATTATTAGAATATGAGCTACGTGGTTTGGTAGCCACTGTTCCGGGTGGTTACATTAGAT
TGGGGGAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(4-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

58

89.286

0.518
  dprA Vibrio campbellii strain DS40M4

54.902

91.071

0.5
  dprA Legionella pneumophila strain ERS1305867

50

89.286

0.446

Multiple sequence alignment