Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   FGL00_RS08985 Genome accession   NZ_LR594034
Coordinates   1793017..1794051 (-) Length   344 a.a.
NCBI ID   WP_138084013.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1788017..1799051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL00_RS08950 (NCTC8546_01853) - 1788641..1788943 (-) 303 WP_003052320.1 YlxQ-related RNA-binding protein -
  FGL00_RS08955 (NCTC8546_01854) - 1788936..1789232 (-) 297 WP_003057040.1 YlxR family protein -
  FGL00_RS08960 (NCTC8546_01855) nusA 1789248..1790405 (-) 1158 WP_138098716.1 transcription termination factor NusA -
  FGL00_RS08965 (NCTC8546_01856) rimP 1790548..1791042 (-) 495 WP_044022604.1 ribosome maturation factor RimP -
  FGL00_RS08975 (NCTC8546_01858) trmB 1791526..1792161 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FGL00_RS08980 (NCTC8546_01859) - 1792161..1792952 (-) 792 WP_138098718.1 phosphotransferase family protein -
  FGL00_RS08985 (NCTC8546_01860) pptB 1793017..1794051 (-) 1035 WP_138084013.1 ABC transporter permease Regulator
  FGL00_RS08990 (NCTC8546_01861) pptA 1794054..1794779 (-) 726 WP_003057032.1 ABC transporter ATP-binding protein Regulator
  FGL00_RS08995 (NCTC8546_01862) - 1794851..1795270 (+) 420 WP_012767493.1 HIT family protein -
  FGL00_RS09000 (NCTC8546_01863) - 1795267..1795596 (+) 330 WP_003057072.1 hypothetical protein -
  FGL00_RS09005 (NCTC8546_01864) - 1795754..1797022 (-) 1269 WP_041789135.1 LCP family protein -
  FGL00_RS09010 (NCTC8546_01865) - 1797034..1797555 (-) 522 WP_046176854.1 GNAT family N-acetyltransferase -
  FGL00_RS09015 (NCTC8546_01866) tsaE 1797548..1797991 (-) 444 WP_014612541.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40222.47 Da        Isoelectric Point: 10.2471

>NTDB_id=1004965 FGL00_RS08985 WP_138084013.1 1793017..1794051(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
MKALFLKRRQDFQKQQSKYLRYVFNDHFVLVLMFLFGFCLVQYSQLLKHFPSNHWPIWLFLMVGMLLLLHLGSVATYLEE
PDHHFLLPKEEAVVAHIKQVERSALVIWGCLQTAILIFLYPIFNRLGFSLVTFALLLLGLLALKRLLLGYKVRHFLKKDG
LDWEKAIAFESNRKQAILKFYSLFTNVKGISTKVKKRSYLNPLLKLVKENSKHLWLTLYLKAFLRSSDYLGLFLRLLLLS
SLALLFISNAYLSVALALVFNYLILFQLLSLYHHYDYHYMTSLYPENHQGKRANLLTFLRGLSCLILVINLLLCHSLEKA
LILVAVMGVITLFYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1004965 FGL00_RS08985 WP_138084013.1 1793017..1794051(-) (pptB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAGAGCAAATACCTGCGCTATGTCTTTAATGACCA
TTTTGTCTTGGTCCTGATGTTTTTGTTTGGTTTTTGCTTGGTGCAATACAGCCAGTTATTGAAGCATTTTCCTAGTAATC
ATTGGCCTATATGGCTCTTTCTCATGGTGGGGATGCTGTTATTGCTTCACTTGGGCTCGGTGGCAACTTATTTAGAAGAG
CCTGATCACCATTTTCTACTTCCGAAAGAAGAAGCTGTGGTTGCTCATATTAAACAAGTTGAACGCTCTGCCCTTGTAAT
TTGGGGCTGTTTACAGACAGCTATCCTCATCTTTTTATATCCGATCTTCAATCGCCTAGGCTTCTCCTTAGTTACTTTTG
CTCTTTTACTTTTGGGATTACTAGCTCTTAAACGACTCCTTTTGGGGTATAAAGTAAGACACTTTTTAAAGAAAGATGGA
CTGGATTGGGAAAAAGCCATTGCTTTTGAGAGTAATCGTAAACAGGCTATCTTAAAGTTTTATTCTCTTTTCACAAATGT
TAAGGGAATTTCCACAAAGGTTAAGAAAAGATCTTATTTAAATCCTCTTCTAAAATTGGTAAAAGAAAATAGTAAGCACC
TTTGGCTAACGCTCTATTTAAAAGCTTTTTTACGAAGTTCAGACTATTTAGGACTCTTTTTACGCTTATTATTATTGAGT
TCCCTAGCCTTGCTGTTTATTTCTAACGCTTACCTATCAGTGGCTTTAGCCTTGGTCTTTAATTATTTGATTCTTTTTCA
ATTGTTGTCTCTTTACCACCATTACGATTACCACTACATGACTAGTCTTTATCCAGAGAATCATCAAGGGAAGCGGGCGA
ATCTATTGACTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTTATCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGCGGTCATGGGAGTCATTACGCTTTTCTACCTCCCTTATAAGTTGAAGAAGATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(156-327)

Bacterial ABC transporter protein EcsB (EcsB)

(2-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

46.512

100

0.465
  pptB Streptococcus salivarius strain HSISS4

46.221

100

0.462