Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   FGL00_RS08540 Genome accession   NZ_LR594034
Coordinates   1701928..1702569 (-) Length   213 a.a.
NCBI ID   WP_014612503.1    Uniprot ID   A0A9X9QU89
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1696928..1707569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL00_RS08520 (NCTC8546_01768) - 1698302..1698940 (+) 639 WP_004230529.1 YigZ family protein -
  FGL00_RS08525 (NCTC8546_01769) cysK 1699044..1699979 (+) 936 WP_138083990.1 cysteine synthase A -
  FGL00_RS08530 (NCTC8546_01770) - 1700132..1700491 (-) 360 WP_003056775.1 S1 RNA-binding domain-containing protein -
  FGL00_RS08535 (NCTC8546_01771) - 1700491..1701891 (-) 1401 WP_138083991.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FGL00_RS08540 (NCTC8546_01772) vraR 1701928..1702569 (-) 642 WP_014612503.1 response regulator transcription factor Regulator
  FGL00_RS08545 (NCTC8546_01773) - 1702562..1703566 (-) 1005 WP_138098698.1 sensor histidine kinase -
  FGL00_RS08550 (NCTC8546_01774) liaF 1703563..1704255 (-) 693 WP_015057977.1 cell wall-active antibiotics response protein LiaF -
  FGL00_RS08555 (NCTC8546_01775) pknB 1704382..1706277 (-) 1896 WP_138098700.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  FGL00_RS08560 (NCTC8546_01776) - 1706274..1707014 (-) 741 WP_014612505.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23806.38 Da        Isoelectric Point: 4.7966

>NTDB_id=1004960 FGL00_RS08540 WP_014612503.1 1701928..1702569(-) (vraR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
MSNIRVILVDDHEMVRMGLKSFLNLQPDIDVIGEASNGREGVELALALKPDVLVMDLVMPELGGVEATLEILDKWKDAKV
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLA
KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1004960 FGL00_RS08540 WP_014612503.1 1701928..1702569(-) (vraR) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
ATGAGTAACATAAGAGTGATACTAGTGGATGATCATGAAATGGTCCGTATGGGACTTAAAAGTTTTTTGAATTTACAACC
AGATATCGACGTTATTGGCGAAGCTTCTAATGGACGTGAGGGAGTTGAGTTGGCCTTAGCCTTAAAACCAGATGTGCTGG
TTATGGATTTGGTGATGCCAGAATTAGGTGGGGTTGAGGCGACTTTGGAAATCCTCGATAAGTGGAAAGATGCCAAAGTA
TTGGTCTTGACTTCTTATTTGGACAATGAGAAAATTTATCCTGTCATTGATGCTGGTGCTAAAGGTTACATGTTAAAGAC
TTCTAGTGCAGCCGAAATTCTAAATGCTATTCGGAAAGTTTCAAAAGGTGAATTGGCCATTGAAACAGAGGTAGACAAAA
AAATTAAAGCGCATGATCAACACCCTGATTTGCATGAAGAGCTAACCGCGCGTGAGTATGATATTTTACATCTTTTAGCT
AAAGGGTATGATAATCAAACTATAGCGGATGAACTTTTCATCTCCTTGAAAACCGTTAAAACGCATGTGTCTAATATTCT
TGCTAAGCTAGAAGTTGATGACCGAACTCAAGCTGTTGTATACGCTTTCCGACACCATTTAGTCCCCCAAGATGATAATT
AG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X9QU89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

51.691

97.183

0.502
  degU Bacillus subtilis subsp. subtilis str. 168

35.398

100

0.376