Detailed information NTG1004933

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABH206_RS20585
• Genome accession: NZ_CP157229
• Coordinates: 4252592..4253392 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain 2024CK-00458 isolate mssing
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4247592..4258392

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABH206_RS20550 (ABH206_20550)	gspH	4247748..4248263 (+)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-
ABH206_RS20555 (ABH206_20555)	gspI	4248260..4248625 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABH206_RS20560 (ABH206_20560)	gspJ	4248622..4249218 (+)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
ABH206_RS20565 (ABH206_20565)	gspK	4249215..4250201 (+)	987	WP_004222697.1	type II secretion system minor pseudopilin GspK	-
ABH206_RS20570 (ABH206_20570)	gspL	4250188..4251381 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
ABH206_RS20575 (ABH206_20575)	-	4251374..4251859 (+)	486	WP_004151943.1	type II secretion system protein M	-
ABH206_RS20580 (ABH206_20580)	-	4251849..4252595 (+)	747	WP_004145897.1	type II secretion system protein N	-
ABH206_RS20585 (ABH206_20585)	pilD	4252592..4253392 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
ABH206_RS20590 (ABH206_20590)	hrpB	4253440..4255869 (-)	2430	WP_020317204.1	ATP-dependent helicase HrpB	-
ABH206_RS20595 (ABH206_20595)	thpR	4255942..4256478 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ABH206_RS20600 (ABH206_20600)	sfsA	4256478..4257194 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABH206_RS20605 (ABH206_20605)	dksA	4257357..4257812 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1004933 ABH206_RS20585 WP_002888947.1 4252592..4253392(+) (pilD) [Klebsiella pneumoniae strain 2024CK-00458 isolate mssing]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1004933 ABH206_RS20585 WP_002888947.1 4252592..4253392(+) (pilD) [Klebsiella pneumoniae strain 2024CK-00458 isolate mssing]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425