Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   FGK95_RS10825 Genome accession   NZ_LR590625
Coordinates   1253050..1253271 (+) Length   73 a.a.
NCBI ID   WP_232038576.1    Uniprot ID   -
Organism   Streptococcus canis strain B700072     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248050..1258271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS06370 (SAMEA5186854_01291) - 1249162..1250415 (+) 1254 WP_138114203.1 extracellular solute-binding protein -
  FGK95_RS06375 (SAMEA5186854_01292) - 1250699..1252060 (+) 1362 WP_093998921.1 carbohydrate ABC transporter permease -
  FGK95_RS06380 (SAMEA5186854_01293) - 1252060..1252896 (+) 837 WP_093998920.1 sugar ABC transporter permease -
  FGK95_RS10825 (SAMEA5186854_01294) ccpA 1253050..1253271 (+) 222 WP_232038576.1 LacI family DNA-binding transcriptional regulator Regulator
  FGK95_RS10830 - 1253593..1253754 (-) 162 WP_232038577.1 hypothetical protein -
  FGK95_RS06390 - 1253996..1254799 (-) 804 Protein_1191 IS630 transposase-related protein -
  FGK95_RS06395 (SAMEA5186854_01295) dltD 1255009..1256271 (-) 1263 WP_093998919.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  FGK95_RS06400 (SAMEA5186854_01296) dltC 1256264..1256503 (-) 240 WP_002984216.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  FGK95_RS06405 (SAMEA5186854_01297) dltB 1256519..1257775 (-) 1257 WP_093998918.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -

Sequence

Protein


Download         Length: 73 a.a.        Molecular weight: 8236.30 Da        Isoelectric Point: 8.0898

>NTDB_id=1004886 FGK95_RS10825 WP_232038576.1 1253050..1253271(+) (ccpA) [Streptococcus canis strain B700072]
MTSEITIKDIAREVGISVTTVSYVLHQRNDQKISEETRNKALHISNLLNYTPNQAARSLSHHNQTVLSCITNM

Nucleotide


Download         Length: 222 bp        

>NTDB_id=1004886 FGK95_RS10825 WP_232038576.1 1253050..1253271(+) (ccpA) [Streptococcus canis strain B700072]
ATGACATCTGAAATTACTATTAAAGATATTGCGCGAGAAGTCGGGATTTCTGTAACGACCGTTTCTTACGTGTTACACCA
GCGCAATGATCAAAAAATTAGTGAAGAAACCCGCAATAAGGCCCTTCATATTAGCAACCTTCTTAACTATACGCCTAATC
AGGCAGCCAGATCATTGTCACATCATAATCAAACAGTGTTGTCCTGTATTACAAATATGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(6-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

41.429

95.89

0.397
  ccpA Streptococcus gordonii str. Challis substr. CH1

40.278

98.63

0.397