Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   FGK95_RS08300 Genome accession   NZ_LR590625
Coordinates   1646843..1647877 (-) Length   344 a.a.
NCBI ID   WP_093999294.1    Uniprot ID   -
Organism   Streptococcus canis strain B700072     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641843..1652877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS08265 (SAMEA5186854_01667) - 1642628..1642930 (-) 303 WP_093999290.1 YlxQ-related RNA-binding protein -
  FGK95_RS08270 (SAMEA5186854_01668) rnpM 1642923..1643219 (-) 297 WP_003044945.1 RNase P modulator RnpM -
  FGK95_RS08275 (SAMEA5186854_01669) nusA 1643235..1644392 (-) 1158 WP_093999291.1 transcription termination factor NusA -
  FGK95_RS08280 (SAMEA5186854_01670) rimP 1644562..1645044 (-) 483 WP_093999292.1 ribosome maturation factor RimP -
  FGK95_RS08290 (SAMEA5186854_01672) trmB 1645362..1645997 (-) 636 WP_093999293.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FGK95_RS08295 (SAMEA5186854_01673) ccrZ 1645997..1646788 (-) 792 WP_003044956.1 cell cycle regulator CcrZ -
  FGK95_RS08300 (SAMEA5186854_01674) pptB 1646843..1647877 (-) 1035 WP_093999294.1 ABC transporter permease Regulator
  FGK95_RS08305 (SAMEA5186854_01675) pptA 1647880..1648605 (-) 726 WP_003044963.1 ABC transporter ATP-binding protein Regulator
  FGK95_RS08310 (SAMEA5186854_01676) - 1648677..1649096 (+) 420 WP_093999295.1 HIT family protein -
  FGK95_RS08315 (SAMEA5186854_01677) - 1649093..1649410 (+) 318 WP_093999296.1 chemotaxis protein -
  FGK95_RS08320 (SAMEA5186854_01678) brpA 1649459..1650730 (-) 1272 WP_093999297.1 biofilm formation/cell division transcriptional regulator BrpA -
  FGK95_RS08325 (SAMEA5186854_01679) - 1650739..1651263 (-) 525 WP_003044971.1 GNAT family N-acetyltransferase -
  FGK95_RS08330 (SAMEA5186854_01680) tsaE 1651256..1651699 (-) 444 WP_039994873.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39751.63 Da        Isoelectric Point: 10.1375

>NTDB_id=1004860 FGK95_RS08300 WP_093999294.1 1646843..1647877(-) (pptB) [Streptococcus canis strain B700072]
MKALFLKRRQDFHKQQSKYLRYVFNDHFVLVLMFLLGFALVQYSQLLRQFPSNHLPVQACLVVLVLLLLNVGSVATYLEE
ADQHFLLPKEEEVVTHIKQAERSAFILWAGLQTAILAFLYPIFNRLGFSLVTFSLCLLVLVAVKKILLSRKVGRFLREEG
LDWEKAVAFENNRKQAILKFYSLFTSVKGISTKVKKRTYLNPLLKLVKEDTKNLWITLYLKAFLRSSDYLGLFLRLLLLS
SLSLLFITNAYLSVGLALVFNYLTLFQLLSLYHHYDYHYMTGLYPENNQGKKANLLAFLRGLSCLILVTNLLLCHSLEKA
LILVVVMGIVTLLYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1004860 FGK95_RS08300 WP_093999294.1 1646843..1647877(-) (pptB) [Streptococcus canis strain B700072]
ATGAAAGCATTATTTCTTAAACGCCGTCAGGATTTTCACAAACAACAAAGCAAGTATTTACGCTATGTCTTTAATGACCA
CTTTGTCTTGGTCTTGATGTTTTTGCTGGGCTTTGCTTTGGTGCAATACAGTCAATTATTGAGACAGTTCCCAAGCAATC
ACCTACCGGTTCAGGCCTGTCTAGTGGTATTGGTCTTATTATTACTCAATGTGGGGTCTGTGGCCACTTATTTAGAAGAA
GCTGATCAACATTTTCTCCTTCCTAAAGAAGAAGAGGTCGTTACTCATATCAAACAAGCTGAGCGTTCTGCTTTTATCCT
TTGGGCTGGTTTACAGACAGCTATTTTAGCTTTTTTGTATCCTATCTTCAATCGCCTAGGTTTCTCCCTAGTTACCTTTT
CTCTTTGCCTTTTGGTTTTAGTAGCGGTGAAAAAGATCCTTTTAAGTCGTAAAGTAGGCCGTTTTCTAAGAGAGGAGGGG
TTGGATTGGGAAAAAGCAGTCGCCTTTGAGAACAATCGTAAGCAGGCTATTTTGAAGTTTTATTCTCTTTTTACAAGTGT
TAAGGGAATTTCTACCAAGGTTAAGAAGCGAACCTACTTAAATCCTCTGTTAAAATTAGTTAAGGAAGATACTAAAAACC
TCTGGATAACGCTTTATCTGAAAGCTTTTTTGCGGAGCTCAGATTATTTAGGGCTATTTCTGAGGTTGTTGTTATTAAGC
TCGCTATCTTTGCTTTTTATTACCAATGCGTATTTATCGGTAGGCTTGGCGCTGGTCTTCAATTATTTGACTCTGTTCCA
ATTACTTTCTCTTTACCATCATTACGATTACCACTACATGACCGGCCTTTATCCTGAAAATAATCAAGGCAAGAAGGCAA
ATCTATTGGCTTTTTTGAGAGGATTAAGTTGTCTGATATTAGTCACCAACCTCCTGCTCTGCCATTCTTTAGAAAAAGCC
CTTATTTTAGTAGTTGTTATGGGAATCGTTACGCTTCTCTACCTTCCTTATAAGTTAAAGAAGATAATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-326)

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

45.93

100

0.459
  pptB Streptococcus salivarius strain HSISS4

45.058

100

0.451