Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABI116_RS19140 Genome accession   NZ_CP157214
Coordinates   3640687..3641409 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS21     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3635687..3646409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI116_RS19105 (ABI116_19105) fliW 3635826..3636257 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  ABI116_RS19110 (ABI116_19110) yviE 3636278..3636853 (-) 576 WP_003243053.1 DUF6470 family protein -
  ABI116_RS19115 (ABI116_19115) flgL 3636900..3637796 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  ABI116_RS19120 (ABI116_19120) flgK 3637807..3639330 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ABI116_RS19125 (ABI116_19125) flgN 3639349..3639831 (-) 483 WP_003227999.1 flagellar protein FlgN -
  ABI116_RS19130 (ABI116_19130) flgM 3639847..3640113 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABI116_RS19135 (ABI116_19135) yvyF 3640194..3640613 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ABI116_RS19140 (ABI116_19140) comFC 3640687..3641409 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  ABI116_RS19145 (ABI116_19145) comFB 3641373..3641669 (-) 297 WP_003227989.1 late competence protein ComFB -
  ABI116_RS19150 (ABI116_19150) comFA 3641729..3643120 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  ABI116_RS19155 (ABI116_19155) fakBA 3643226..3644071 (-) 846 WP_003244125.1 DegV family protein -
  ABI116_RS19160 (ABI116_19160) degU 3644169..3644858 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABI116_RS19165 (ABI116_19165) degS 3644941..3646098 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=1004783 ABI116_RS19140 WP_003227991.1 3640687..3641409(-) (comFC) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1004783 ABI116_RS19140 WP_003227991.1 3640687..3641409(-) (comFC) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment