Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   FGK81_RS02165 Genome accession   NZ_LR590466
Coordinates   443244..444278 (+) Length   344 a.a.
NCBI ID   WP_002994331.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8193     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 438244..449278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK81_RS02135 (NCTC8193_00419) tsaE 439309..439770 (+) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  FGK81_RS02140 (NCTC8193_00420) - 439745..440269 (+) 525 WP_011888642.1 GNAT family N-acetyltransferase -
  FGK81_RS02145 (NCTC8193_00421) brpA 440278..441561 (+) 1284 WP_002983372.1 biofilm formation/cell division transcriptional regulator BrpA -
  FGK81_RS02150 (NCTC8193_00422) - 441672..442028 (-) 357 WP_011888643.1 hypothetical protein -
  FGK81_RS02155 (NCTC8193_00423) - 442025..442444 (-) 420 WP_002983376.1 HIT family protein -
  FGK81_RS02160 (NCTC8193_00424) pptA 442516..443241 (+) 726 WP_011888644.1 ABC transporter ATP-binding protein Regulator
  FGK81_RS02165 (NCTC8193_00425) pptB 443244..444278 (+) 1035 WP_002994331.1 ABC transporter permease Regulator
  FGK81_RS02170 (NCTC8193_00426) ccrZ 444342..445133 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  FGK81_RS02175 (NCTC8193_00427) trmB 445133..445768 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FGK81_RS02185 (NCTC8193_00429) rimP 446027..446563 (+) 537 WP_011888645.1 ribosome maturation factor RimP -
  FGK81_RS02190 (NCTC8193_00430) nusA 446738..447895 (+) 1158 WP_002983485.1 transcription termination factor NusA -
  FGK81_RS02195 (NCTC8193_00431) rnpM 447911..448207 (+) 297 WP_002983486.1 RNase P modulator RnpM -
  FGK81_RS02200 (NCTC8193_00432) - 448200..448502 (+) 303 WP_002983488.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40242.46 Da        Isoelectric Point: 10.3713

>NTDB_id=1004622 FGK81_RS02165 WP_002994331.1 443244..444278(+) (pptB) [Streptococcus pyogenes strain NCTC8193]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1004622 FGK81_RS02165 WP_002994331.1 443244..444278(+) (pptB) [Streptococcus pyogenes strain NCTC8193]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427