Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   E0F34_RS02700 Genome accession   NZ_LR536843
Coordinates   495722..496771 (+) Length   349 a.a.
NCBI ID   WP_000653773.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 490722..501771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F34_RS02675 (SAMEA104035599_00510) - 491990..492346 (+) 357 WP_130885224.1 tRNA (guanine-N7)-methyltransferase -
  E0F34_RS02680 (SAMEA104035599_00511) dnaJ 492748..493884 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  E0F34_RS02685 (SAMEA104035599_00512) - 494219..494506 (-) 288 WP_000777760.1 hypothetical protein -
  E0F34_RS02690 (SAMEA104035599_00513) - 494516..494926 (-) 411 WP_001278301.1 HIT family protein -
  E0F34_RS02695 (SAMEA104035599_00514) pptA 494994..495725 (+) 732 WP_000889921.1 ABC transporter ATP-binding protein Regulator
  E0F34_RS02700 (SAMEA104035599_00515) pptB 495722..496771 (+) 1050 WP_000653773.1 ABC transporter permease Regulator
  E0F34_RS02710 (SAMEA104035599_00516) - 496939..497268 (-) 330 WP_000132567.1 hypothetical protein -
  E0F34_RS02715 (SAMEA104035599_00517) - 497544..497882 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  E0F34_RS02720 (SAMEA104035599_00518) comE/blpR 497887..498624 (+) 738 WP_001219122.1 response regulator transcription factor Regulator
  E0F34_RS02725 (SAMEA104035599_00519) - 498638..499978 (+) 1341 WP_001099895.1 sensor histidine kinase -
  E0F34_RS02730 (SAMEA104035599_00520) blpC 500023..500178 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  E0F34_RS02735 (SAMEA104035599_00521) - 500235..501596 (-) 1362 WP_001069098.1 bacteriocin secretion accessory protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 40571.59 Da        Isoelectric Point: 10.0008

>NTDB_id=1004442 E0F34_RS02700 WP_000653773.1 495722..496771(+) (pptB) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLQVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1004442 E0F34_RS02700 WP_000653773.1 495722..496771(+) (pptB) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTACTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACCTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTTCAAGAA
AAACTAGCCCTTCTAGCCTTACTGGGAGCTGGTTTGGTTTTACAAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-156)

Bacterial ABC transporter protein EcsB (EcsB)

(158-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479
  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47