Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABH595_RS13385 Genome accession   NZ_CP157084
Coordinates   2561311..2561646 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS9     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2556311..2566646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH595_RS13365 (ABH595_13365) gcvT 2556903..2557991 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  ABH595_RS13370 (ABH595_13370) yqhH 2558433..2560106 (+) 1674 WP_004398544.1 SNF2-related protein -
  ABH595_RS13375 (ABH595_13375) yqhG 2560127..2560921 (+) 795 WP_003230200.1 YqhG family protein -
  ABH595_RS13380 (ABH595_13380) sinI 2561104..2561277 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  ABH595_RS13385 (ABH595_13385) sinR 2561311..2561646 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ABH595_RS13390 (ABH595_13390) tasA 2561739..2562524 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  ABH595_RS13395 (ABH595_13395) sipW 2562588..2563160 (-) 573 WP_003246088.1 signal peptidase I -
  ABH595_RS13400 (ABH595_13400) tapA 2563144..2563905 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  ABH595_RS13405 (ABH595_13405) yqzG 2564177..2564503 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ABH595_RS13410 (ABH595_13410) spoIIT 2564545..2564724 (-) 180 WP_003230176.1 YqzE family protein -
  ABH595_RS13415 (ABH595_13415) comGG 2564795..2565169 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  ABH595_RS13420 (ABH595_13420) comGF 2565170..2565553 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  ABH595_RS13425 (ABH595_13425) comGE 2565579..2565926 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  ABH595_RS13430 (ABH595_13430) comGD 2565910..2566341 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  ABH595_RS13435 (ABH595_13435) comGC 2566331..2566627 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1004087 ABH595_RS13385 WP_003226345.1 2561311..2561646(+) (sinR) [Bacillus subtilis subsp. subtilis isolate FELIX_MS9]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1004087 ABH595_RS13385 WP_003226345.1 2561311..2561646(+) (sinR) [Bacillus subtilis subsp. subtilis isolate FELIX_MS9]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment