Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   E0F40_RS02465 Genome accession   NZ_LR216065
Coordinates   448807..449856 (+) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 443807..454856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F40_RS11610 - 444642..445275 (+) 634 Protein_453 DJ-1/PfpI family protein -
  E0F40_RS02440 (SAMEA3714487_00445) dnaJ 445445..446581 (+) 1137 WP_001066288.1 molecular chaperone DnaJ -
  E0F40_RS11615 - 446903..447142 (-) 240 WP_001813906.1 hypothetical protein -
  E0F40_RS02450 (SAMEA3714487_00446) - 447304..447591 (-) 288 WP_000777760.1 hypothetical protein -
  E0F40_RS02455 (SAMEA3714487_00447) - 447601..448011 (-) 411 WP_001278301.1 HIT family protein -
  E0F40_RS02460 (SAMEA3714487_00448) pptA 448079..448810 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  E0F40_RS02465 (SAMEA3714487_00449) pptB 448807..449856 (+) 1050 WP_000653771.1 ABC transporter permease Regulator
  E0F40_RS02470 (SAMEA3714487_00450) - 450024..450353 (-) 330 WP_000132572.1 hypothetical protein -
  E0F40_RS02475 (SAMEA3714487_00451) - 450630..450968 (+) 339 WP_000682132.1 LytTR family DNA-binding domain-containing protein -
  E0F40_RS02480 (SAMEA3714487_00452) comE/blpR 450973..451710 (+) 738 WP_001219146.1 response regulator transcription factor Regulator
  E0F40_RS02485 (SAMEA3714487_00453) - 451724..453064 (+) 1341 WP_001099895.1 sensor histidine kinase -
  E0F40_RS02490 (SAMEA3714487_00454) blpC 453109..453264 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  E0F40_RS02495 (SAMEA3714487_00455) - 453321..454682 (-) 1362 WP_001069098.1 bacteriocin secretion accessory protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=1004064 E0F40_RS02465 WP_000653771.1 448807..449856(+) (pptB) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1004064 E0F40_RS02465 WP_000653771.1 448807..449856(+) (pptB) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATTAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACTCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGG
CTGGACTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-156)

Bacterial ABC transporter protein EcsB (EcsB)

(158-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479
  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47

Multiple sequence alignment