Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAEY33_RS27950 Genome accession   NZ_CP157082
Coordinates   5690980..5691507 (-) Length   175 a.a.
NCBI ID   WP_034316149.1    Uniprot ID   A0A9W4KK92
Organism   Peribacillus simplex strain IMGN11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5685980..5696507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEY33_RS27930 (AAEY33_27925) rplI 5687052..5687501 (-) 450 WP_098370316.1 50S ribosomal protein L9 -
  AAEY33_RS27935 (AAEY33_27930) - 5687498..5689468 (-) 1971 WP_098370317.1 DHH family phosphoesterase -
  AAEY33_RS27940 (AAEY33_27935) - 5689510..5690457 (-) 948 WP_347940957.1 YybS family protein -
  AAEY33_RS27945 (AAEY33_27940) rpsR 5690693..5690932 (-) 240 WP_034316147.1 30S ribosomal protein S18 -
  AAEY33_RS27950 (AAEY33_27945) ssbA 5690980..5691507 (-) 528 WP_034316149.1 single-stranded DNA-binding protein Machinery gene
  AAEY33_RS27955 (AAEY33_27950) rpsF 5691577..5691861 (-) 285 WP_034316153.1 30S ribosomal protein S6 -
  AAEY33_RS27960 (AAEY33_27955) ychF 5692057..5693157 (-) 1101 WP_076368500.1 redox-regulated ATPase YchF -
  AAEY33_RS27965 (AAEY33_27960) - 5693325..5693522 (-) 198 WP_034316158.1 DUF951 domain-containing protein -
  AAEY33_RS27970 (AAEY33_27965) - 5693543..5694379 (-) 837 WP_144527216.1 mechanosensitive ion channel family protein -
  AAEY33_RS27975 (AAEY33_27970) yyaC 5694771..5695406 (+) 636 WP_098370321.1 spore protease YyaC -
  AAEY33_RS27980 (AAEY33_27975) - 5695463..5696164 (-) 702 WP_076368504.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19418.10 Da        Isoelectric Point: 4.8282

>NTDB_id=1004040 AAEY33_RS27950 WP_034316149.1 5690980..5691507(-) (ssbA) [Peribacillus simplex strain IMGN11]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYGNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPFA
NDGKTIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1004040 AAEY33_RS27950 WP_034316149.1 5690980..5691507(-) (ssbA) [Peribacillus simplex strain IMGN11]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTGAACCGTAGTTTTACGAATCAGCAGGGTGAACGTGAAGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGTGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGAGGTCAAAGAAGTTATGGCAATAATAACGGAAATGACA
ACAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCGTTTGCA
AATGACGGTAAGACAATCGACATTTCAGATGACGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.101

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.566
  ssb Glaesserella parasuis strain SC1401

35.829

100

0.383
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.571

0.377

Multiple sequence alignment