Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   E0F39_RS12850 Genome accession   NZ_LR216060
Coordinates   1494830..1495552 (-) Length   240 a.a.
NCBI ID   WP_001864981.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC47 substr. ST315     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489830..1500552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F39_RS08040 (SAMEA3713867_01526) - 1492405..1493571 (-) 1167 WP_000521384.1 MalY/PatB family protein -
  E0F39_RS08045 (SAMEA3713867_01527) - 1493579..1494673 (-) 1095 WP_130886886.1 cystathionine gamma-synthase -
  E0F39_RS12850 (SAMEA3713867_01528) rcrP 1494830..1495552 (-) 723 WP_001864981.1 ABC transporter ATP-binding protein Regulator
  E0F39_RS12855 (SAMEA3713867_01529) - 1495625..1496512 (-) 888 WP_001864980.1 ABC transporter ATP-binding protein -
  E0F39_RS13070 - 1496654..1496788 (-) 135 WP_269472060.1 hypothetical protein -
  E0F39_RS08055 (SAMEA3713867_01530) amiA3 1496983..1498944 (-) 1962 WP_000748892.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27202.03 Da        Isoelectric Point: 5.0452

>NTDB_id=1003923 E0F39_RS12850 WP_001864981.1 1494830..1495552(-) (rcrP) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1003923 E0F39_RS12850 WP_001864981.1 1494830..1495552(-) (rcrP) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAGTGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367
  rcrQ Streptococcus mutans UA159

36.25

100

0.363
  comA Streptococcus mitis SK321

37.179

97.5

0.362