Detailed information NTG1003837

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABH008_RS18590
• Genome accession: NZ_CP157005
• Coordinates: 4176225..4177571 (+)
• Length: 448 a.a.
• NCBI ID: WP_347987105.1
• Uniprot ID: -
• Organism: Methylomonas sp. AM2-LC
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4171225..4182571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABH008_RS18575	sucD	4172474..4173340 (-)	867	WP_347987102.1	succinate--CoA ligase subunit alpha	-
ABH008_RS18580	sucC	4173337..4174506 (-)	1170	WP_347987103.1	ADP-forming succinate--CoA ligase subunit beta	-
ABH008_RS18585	-	4174606..4176228 (+)	1623	WP_347987104.1	HAMP domain-containing sensor histidine kinase	-
ABH008_RS18590	pilR	4176225..4177571 (+)	1347	WP_347987105.1	sigma-54 dependent transcriptional regulator	Regulator
ABH008_RS18595	-	4177643..4178131 (-)	489	WP_347987106.1	hypothetical protein	-
ABH008_RS18600	-	4178403..4180241 (-)	1839	WP_347987107.1	EAL domain-containing protein	-
ABH008_RS18605	-	4180425..4181273 (+)	849	WP_347987108.1	HDOD domain-containing protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49864.48 Da
• Isoelectric Point: 6.7722

>NTDB_id=1003837 ABH008_RS18590 WP_347987105.1 4176225..4177571(+) (pilR) [Methylomonas sp. AM2-LC]
MRMPVTLIVDDEPDIRELLEITLNRMQIKTFTAENLATAQQLLSTQSFDLCLTDMNLPDGDGLDLLEYINSTGLQLPVAI
ITAYGSMDNAIKAMKKGAFDFVCKPVDLSTLRQLVNHALELSKPKSVDEKVERRIRHILLGDSEVMCAIRSKIHKVARNQ
APVYISGESGSGKELVAKLIHEQSYRNKAPFVAINCGAIPAELMESEFFGHKKGSFTGAISDKQGLFQAANGGTLFLDEV
ADLPLTLQVKLLRAIQEKKVRPVGEHAEIHVDIRLLSATHKDLGSMVQNGSFRQDLYYRINVIELNLPALRTRPADIPEL
SKHLIVRLANRNGTPVPKLSANALQALKQYYFPGNVRELENILERAMALDEDGSLDLDDLNLPIGMNSKAAEDFDSGKMS
LENYLEGIEKKAVTTALEENRWNKTATAKQLGLTFRSLRYRLKKLGLE

Nucleotide

• Length: 1347 bp

>NTDB_id=1003837 ABH008_RS18590 WP_347987105.1 4176225..4177571(+) (pilR) [Methylomonas sp. AM2-LC]
ATGAGAATGCCCGTTACTTTAATTGTTGATGATGAACCCGATATTCGCGAATTATTGGAAATAACACTAAATCGAATGCA
GATTAAAACCTTTACGGCTGAAAATCTGGCTACTGCTCAACAATTATTAAGCACCCAAAGTTTTGATTTATGCCTGACGG
ATATGAACTTACCGGATGGCGATGGCTTGGATTTGCTGGAATACATTAATAGTACAGGCCTACAACTCCCTGTTGCCATT
ATCACCGCCTATGGCAGTATGGACAATGCCATTAAGGCCATGAAAAAAGGTGCGTTTGACTTTGTATGCAAACCCGTTGA
CTTATCCACACTTCGCCAACTCGTTAACCATGCTTTAGAGCTATCAAAGCCTAAATCGGTCGATGAAAAAGTAGAGCGCC
GGATACGACATATTTTGCTGGGTGACTCCGAGGTTATGTGTGCCATCCGTTCAAAAATCCATAAAGTAGCACGTAATCAG
GCGCCAGTTTATATTAGTGGCGAATCAGGATCGGGCAAAGAACTGGTTGCAAAACTGATACATGAACAAAGCTACCGAAA
TAAAGCCCCCTTTGTCGCCATTAACTGTGGTGCCATACCCGCAGAATTAATGGAAAGCGAATTTTTTGGTCATAAGAAAG
GAAGTTTTACCGGCGCGATCAGTGATAAACAAGGTTTATTTCAAGCGGCGAATGGTGGCACTCTGTTTCTTGACGAAGTA
GCGGATTTACCTTTAACCTTACAAGTTAAATTACTGCGGGCTATACAGGAGAAAAAAGTTCGGCCCGTTGGTGAGCATGC
AGAAATACATGTTGATATTCGCTTACTGAGTGCCACTCATAAAGATTTGGGCAGTATGGTACAAAATGGCAGTTTCCGGC
AAGACTTGTATTATCGTATTAATGTTATTGAACTGAATTTACCCGCTTTACGTACGCGTCCAGCGGATATCCCAGAGTTA
AGCAAGCACTTAATTGTCAGGTTGGCAAATAGAAACGGCACACCCGTGCCAAAATTGTCCGCCAATGCACTACAGGCTTT
AAAACAATATTATTTTCCTGGGAATGTTCGTGAATTGGAAAATATTCTGGAAAGAGCCATGGCACTGGATGAAGATGGTA
GCCTTGATCTAGATGATTTGAATTTGCCCATCGGTATGAATTCAAAGGCCGCTGAAGACTTTGACTCAGGAAAAATGTCA
CTTGAAAATTATCTGGAAGGCATCGAAAAAAAGGCTGTAACAACGGCTCTGGAAGAAAACCGATGGAACAAAACGGCTAC
CGCCAAACAATTGGGACTCACCTTTCGCTCCTTACGTTACCGATTAAAAAAGCTAGGTTTAGAATAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (140-305)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.969	99.777	0.618
pilR	Acinetobacter baumannii strain A118	49.679	100	0.518