Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   E0F32_RS07905 Genome accession   NZ_LR216050
Coordinates   1473861..1474538 (-) Length   225 a.a.
NCBI ID   WP_000548961.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC10 substr. ST2013 isolate GPS_US_PATH396-sc-2296505     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1468861..1479538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F32_RS07870 (SAMEA3431333_01482) - 1469024..1469653 (-) 630 WP_000762099.1 NAD(P)-dependent oxidoreductase -
  E0F32_RS07875 (SAMEA3431333_01483) - 1469890..1470090 (+) 201 WP_001814296.1 hypothetical protein -
  E0F32_RS07890 (SAMEA3431333_01484) - 1470521..1470844 (+) 324 WP_000422781.1 hypothetical protein -
  E0F32_RS07895 (SAMEA3431333_01485) thrS 1470902..1472845 (+) 1944 WP_000608358.1 threonine--tRNA ligase -
  E0F32_RS07900 (SAMEA3431333_01486) - 1472894..1473868 (-) 975 WP_000887954.1 HAMP domain-containing histidine kinase -
  E0F32_RS07905 (SAMEA3431333_01487) braR 1473861..1474538 (-) 678 WP_000548961.1 response regulator transcription factor Regulator
  E0F32_RS07910 (SAMEA3431333_01488) - 1474694..1475767 (+) 1074 WP_001273817.1 DUF2974 domain-containing protein -
  E0F32_RS07915 (SAMEA3431333_01489) - 1475858..1476160 (-) 303 WP_000281608.1 hypothetical protein -
  E0F32_RS07920 (SAMEA3431333_01490) - 1476228..1476665 (-) 438 WP_001166786.1 Rrf2 family transcriptional regulator -
  E0F32_RS07925 (SAMEA3431333_01491) - 1476741..1477583 (-) 843 WP_000160928.1 metallophosphoesterase family protein -
  E0F32_RS07930 (SAMEA3431333_01492) - 1477695..1478345 (+) 651 WP_000188505.1 metal-dependent transcriptional regulator -
  E0F32_RS07940 (SAMEA3431333_01493) - 1478522..1479197 (+) 676 Protein_1507 nicotinamide mononucleotide transporter -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25950.13 Da        Isoelectric Point: 5.1362

>NTDB_id=1003754 E0F32_RS07905 WP_000548961.1 1473861..1474538(-) (braR) [Streptococcus pneumoniae strain GPSC10 substr. ST2013 isolate GPS_US_PATH396-sc-2296505]
MHKILLIEDDQVIRQQVGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNGYHWCQEIRKISKVPIMFLSS
RDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQIL
RVLFEHAGNIVARDDLMRELWNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGLKHA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=1003754 E0F32_RS07905 WP_000548961.1 1473861..1474538(-) (braR) [Streptococcus pneumoniae strain GPSC10 substr. ST2013 isolate GPS_US_PATH396-sc-2296505]
ATGCACAAGATTTTATTAATAGAAGATGATCAGGTCATTCGTCAACAGGTCGGGAAAATGCTCTCTGAATGGGGATTTGA
AGTGGTCCTGGTAGAAGACTTTATGGAAGTTTTGAGTCTATTTGTTCAGTCGGAACCTCATCTGGTCCTCATGGATATTG
GTTTGCCCTTGTTTAATGGTTATCACTGGTGTCAGGAAATCCGCAAGATTTCCAAGGTACCTATCATGTTTCTTTCTTCG
AGAGACCAGGCTATGGATATTGTCATGGCAATCAATATGGGGGCGGATGACTTTGTGACCAAGCCTTTTGACCAGCAGGT
TCTTTTAGCTAAGGTTCAGGGCTTGTTGCGTCGTTCCTATGAGTTTGGGCGTGATGAGAGTTTGCTGGAATATGCTGGTG
TTATCCTCAATACCAAATCCATGGATTTACATTATCAAGGGCAAGTCTTGAATTTGACCAAGAATGAATTCCAGATTTTA
CGCGTGTTATTTGAGCATGCAGGCAACATCGTAGCACGTGACGACCTGATGCGGGAACTTTGGAACAGTGACTTTTTCAT
TGATGATAATACCCTCTCTGTCAATGTGGCTCGTTTGCGTAAAAAGTTGGAGGAGCAGGGATTGGTAGGATTTATCGAGA
CCAAGAAAGGAATAGGGTACGGATTGAAGCATGCTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.624

96.889

0.471
  vicR Streptococcus mutans UA159

34.894

100

0.364