Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | M744_RS10035 | Genome accession | NZ_CP006471 |
| Coordinates | 2021634..2022011 (+) | Length | 125 a.a. |
| NCBI ID | WP_011377923.1 | Uniprot ID | Q79PF9 |
| Organism | Synechococcus elongatus UTEX 2973 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2016634..2027011
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M744_RS10015 (M744_10520) | - | 2017539..2018285 (+) | 747 | WP_011377925.1 | phycocyanobilin:ferredoxin oxidoreductase | - |
| M744_RS10020 (M744_10525) | - | 2018374..2019474 (+) | 1101 | WP_011242640.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| M744_RS10025 (M744_10530) | devC | 2019458..2020636 (+) | 1179 | WP_011377924.1 | ABC transporter permease DevC | - |
| M744_RS10030 (M744_10535) | truB | 2020657..2021541 (-) | 885 | WP_011242642.1 | tRNA pseudouridine(55) synthase TruB | - |
| M744_RS10035 (M744_10540) | pilH | 2021634..2022011 (+) | 378 | WP_011377923.1 | response regulator | Machinery gene |
| M744_RS10040 (M744_10545) | rpmA | 2022133..2022399 (-) | 267 | WP_011242644.1 | 50S ribosomal protein L27 | - |
| M744_RS10045 (M744_10550) | rplU | 2022434..2022817 (-) | 384 | WP_011377922.1 | 50S ribosomal protein L21 | - |
| M744_RS10050 (M744_10555) | - | 2023055..2023909 (+) | 855 | WP_011377921.1 | circadian clock protein KaiA | - |
| M744_RS10055 (M744_10560) | kaiB | 2023999..2024307 (+) | 309 | WP_011242647.1 | circadian clock protein KaiB | - |
| M744_RS10060 (M744_10565) | kaiC | 2024357..2025916 (+) | 1560 | WP_011242648.1 | circadian clock protein KaiC | - |
| M744_RS10065 (M744_10570) | - | 2025913..2026920 (-) | 1008 | WP_011377920.1 | acyl-CoA dehydrogenase family protein | - |
Sequence
Protein
Download Length: 125 a.a. Molecular weight: 13841.82 Da Isoelectric Point: 4.5355
>NTDB_id=100368 M744_RS10035 WP_011377923.1 2021634..2022011(+) (pilH) [Synechococcus elongatus UTEX 2973]
MANILVVDDSSLYLELARQALVDHGHQVELANNGQEALQSVANKKPDLILLDIVMPEMNGYDVLRSLKKSAENATIPVIL
CSTKGEDFDKYWGLKQGANAYLTKPYEPTELLLLVQEQLTAARNS
MANILVVDDSSLYLELARQALVDHGHQVELANNGQEALQSVANKKPDLILLDIVMPEMNGYDVLRSLKKSAENATIPVIL
CSTKGEDFDKYWGLKQGANAYLTKPYEPTELLLLVQEQLTAARNS
Nucleotide
Download Length: 378 bp
>NTDB_id=100368 M744_RS10035 WP_011377923.1 2021634..2022011(+) (pilH) [Synechococcus elongatus UTEX 2973]
ATGGCCAATATCCTCGTTGTTGATGACAGCAGTCTCTACCTAGAACTTGCCCGTCAAGCCTTAGTTGATCATGGCCACCA
GGTTGAACTTGCCAACAACGGTCAAGAAGCCTTGCAATCCGTCGCCAACAAGAAGCCTGACTTGATTCTGCTCGATATCG
TTATGCCAGAAATGAATGGCTACGACGTACTGCGATCGCTCAAGAAATCAGCTGAAAACGCTACGATTCCTGTCATTCTT
TGCTCGACCAAAGGCGAGGATTTTGACAAGTATTGGGGGCTCAAACAGGGAGCCAATGCCTACTTGACTAAGCCCTATGA
ACCAACCGAACTATTGCTATTGGTGCAGGAACAACTGACTGCAGCCCGCAATTCTTGA
ATGGCCAATATCCTCGTTGTTGATGACAGCAGTCTCTACCTAGAACTTGCCCGTCAAGCCTTAGTTGATCATGGCCACCA
GGTTGAACTTGCCAACAACGGTCAAGAAGCCTTGCAATCCGTCGCCAACAAGAAGCCTGACTTGATTCTGCTCGATATCG
TTATGCCAGAAATGAATGGCTACGACGTACTGCGATCGCTCAAGAAATCAGCTGAAAACGCTACGATTCCTGTCATTCTT
TGCTCGACCAAAGGCGAGGATTTTGACAAGTATTGGGGGCTCAAACAGGGAGCCAATGCCTACTTGACTAAGCCCTATGA
ACCAACCGAACTATTGCTATTGGTGCAGGAACAACTGACTGCAGCCCGCAATTCTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
48.739 |
95.2 |
0.464 |
| vicR | Streptococcus mutans UA159 |
37.097 |
99.2 |
0.368 |