Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL305_RS10715 Genome accession   NZ_LR134528
Coordinates   1805736..1806200 (+) Length   154 a.a.
NCBI ID   WP_164715749.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC12163     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1800736..1811200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL305_RS10715 (NCTC12163_01805) comE 1805736..1806200 (+) 465 WP_164715749.1 ComEA family DNA-binding protein Machinery gene
  EL305_RS14150 (NCTC12163_01806) - 1806312..1806770 (+) 459 WP_002234522.1 hypothetical protein -
  EL305_RS10730 (NCTC12163_01807) - 1806890..1807543 (+) 654 WP_002235427.1 IS1595 family transposase -
  EL305_RS10735 - 1807708..1807917 (+) 210 Protein_1808 transposase -
  EL305_RS10740 (NCTC12163_01808) - 1807899..1808156 (-) 258 WP_002231679.1 membrane protein -
  EL305_RS13635 - 1808434..1808661 (+) 228 WP_153310284.1 hypothetical protein -
  EL305_RS10750 (NCTC12163_01809) aroG 1808823..1809878 (+) 1056 WP_002233494.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  EL305_RS10755 (NCTC12163_01810) - 1809946..1810434 (+) 489 WP_002233495.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16459.71 Da        Isoelectric Point: 10.9585

>NTDB_id=1003674 EL305_RS10715 WP_164715749.1 1805736..1806200(+) (comE) [Neisseria meningitidis strain NCTC12163]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1003674 EL305_RS10715 WP_164715749.1 1805736..1806200(+) (comE) [Neisseria meningitidis strain NCTC12163]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment