Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL297_RS01725 Genome accession   NZ_LR134525
Coordinates   293020..293484 (+) Length   154 a.a.
NCBI ID   WP_010981251.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10025     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 288020..298484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL297_RS01725 (NCTC10025_00282) comE 293020..293484 (+) 465 WP_010981251.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL297_RS01730 (NCTC10025_00283) - 293598..294035 (-) 438 Protein_268 HK97 family phage prohead protease -
  EL297_RS01735 (NCTC10025_00284) - 294147..294740 (-) 594 WP_002246348.1 hypothetical protein -
  EL297_RS01740 (NCTC10025_00285) prmB 294885..295784 (+) 900 WP_002232685.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  EL297_RS13845 - 295797..295925 (+) 129 WP_002212671.1 hypothetical protein -
  EL297_RS01745 (NCTC10025_00286) - 296065..296802 (+) 738 WP_002216708.1 toxin-antitoxin system YwqK family antitoxin -
  EL297_RS01750 (NCTC10025_00287) - 296928..297200 (+) 273 WP_002234162.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16457.69 Da        Isoelectric Point: 10.7894

>NTDB_id=1003485 EL297_RS01725 WP_010981251.1 293020..293484(+) (comE) [Neisseria meningitidis strain NCTC10025]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1003485 EL297_RS01725 WP_010981251.1 293020..293484(+) (comE) [Neisseria meningitidis strain NCTC10025]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74