Detailed information NTG1003461

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABG872_RS24390
• Genome accession: NZ_CP156950
• Coordinates: 4430258..4431058 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain 2024CK-00456
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4425258..4436058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABG872_RS24355 (ABG872_24360)	gspH	4425414..4425929 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
ABG872_RS24360 (ABG872_24365)	gspI	4425926..4426291 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABG872_RS24365 (ABG872_24370)	gspJ	4426288..4426884 (+)	597	WP_032433846.1	type II secretion system minor pseudopilin GspJ	-
ABG872_RS24370 (ABG872_24375)	gspK	4426881..4427867 (+)	987	WP_077255453.1	type II secretion system minor pseudopilin GspK	-
ABG872_RS24375 (ABG872_24380)	gspL	4427854..4429047 (+)	1194	WP_032416685.1	type II secretion system protein GspL	-
ABG872_RS24380 (ABG872_24385)	-	4429040..4429525 (+)	486	WP_004145896.1	type II secretion system protein M	-
ABG872_RS24385 (ABG872_24390)	-	4429515..4430261 (+)	747	WP_004145897.1	type II secretion system protein N	-
ABG872_RS24390 (ABG872_24395)	pilD	4430258..4431058 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
ABG872_RS24395 (ABG872_24400)	hrpB	4431106..4433535 (-)	2430	WP_064472269.1	ATP-dependent helicase HrpB	-
ABG872_RS24400 (ABG872_24405)	thpR	4433608..4434144 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
ABG872_RS24405 (ABG872_24410)	sfsA	4434144..4434860 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABG872_RS24410 (ABG872_24415)	dksA	4435023..4435478 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1003461 ABG872_RS24390 WP_004191960.1 4430258..4431058(+) (pilD) [Klebsiella pneumoniae strain 2024CK-00456]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=1003461 ABG872_RS24390 WP_004191960.1 4430258..4431058(+) (pilD) [Klebsiella pneumoniae strain 2024CK-00456]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421