Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   M744_RS03845 Genome accession   NZ_CP006471
Coordinates   733959..734318 (+) Length   119 a.a.
NCBI ID   WP_234910001.1    Uniprot ID   -
Organism   Synechococcus elongatus UTEX 2973     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 728959..739318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M744_RS03815 (M744_03950) - 729109..730059 (-) 951 WP_011243958.1 DUF4335 domain-containing protein -
  M744_RS03820 (M744_03955) - 730066..730689 (-) 624 WP_039755549.1 DUF3038 domain-containing protein -
  M744_RS03825 (M744_03960) - 730860..731376 (+) 517 Protein_752 adenine phosphoribosyltransferase -
  M744_RS03830 (M744_03965) - 731383..732378 (+) 996 WP_039755550.1 ABC transporter permease -
  M744_RS03835 (M744_03970) pilM 732520..733599 (+) 1080 WP_011243962.1 type IV pilus assembly protein PilM Machinery gene
  M744_RS03840 (M744_03975) - 733602..733940 (+) 339 WP_011243963.1 hypothetical protein -
  M744_RS03845 (M744_03980) pilN 733959..734318 (+) 360 WP_234910001.1 PilN domain-containing protein Machinery gene
  M744_RS03850 (M744_03985) - 734315..735109 (+) 795 WP_011378469.1 hypothetical protein -
  M744_RS03855 (M744_03990) - 735187..737502 (+) 2316 WP_011378468.1 secretin N-terminal domain-containing protein -
  M744_RS03860 (M744_03995) - 737674..738309 (-) 636 WP_011378467.1 peroxiredoxin -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 12909.61 Da        Isoelectric Point: 10.0925

>NTDB_id=100345 M744_RS03845 WP_234910001.1 733959..734318(+) (pilN) [Synechococcus elongatus UTEX 2973]
MSRRTPVAVQISKIEQAGKKVTLQGSSSNYDSVNDLLLTLQQSRFFTASSLRIEEAKLGATPTQNTGENSPKLSNVNYRI
VGELSDVPTTDLLQNLRQLDAQGLAARLQGLVNQGVLKP

Nucleotide


Download         Length: 360 bp        

>NTDB_id=100345 M744_RS03845 WP_234910001.1 733959..734318(+) (pilN) [Synechococcus elongatus UTEX 2973]
CTGAGTCGACGGACCCCGGTGGCAGTTCAGATCAGCAAGATTGAGCAGGCGGGCAAGAAGGTCACCCTACAGGGCAGTTC
TTCTAACTACGACTCGGTCAATGACCTGCTGCTGACCTTGCAGCAGTCGCGTTTCTTTACAGCTAGCAGCCTGCGGATTG
AAGAGGCGAAATTAGGCGCTACCCCTACTCAAAATACAGGGGAGAACAGTCCTAAGCTGTCGAATGTGAACTATCGCATT
GTCGGTGAGCTCAGCGACGTTCCCACGACGGATCTCTTGCAAAATCTCCGTCAGCTCGATGCTCAAGGTCTTGCTGCTCG
CCTGCAGGGATTAGTGAACCAAGGGGTACTGAAGCCATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(1-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Synechocystis sp. PCC 6803

32.09

100

0.361

Multiple sequence alignment