Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   EL310_RS05050 Genome accession   NZ_LR134522
Coordinates   824189..824866 (-) Length   225 a.a.
NCBI ID   WP_002246220.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC3372     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 819189..829866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL310_RS05035 (NCTC3372_00864) hflX 820775..821953 (-) 1179 WP_002246219.1 GTPase HflX -
  EL310_RS05040 (NCTC3372_00865) - 821958..823238 (-) 1281 WP_002225276.1 CAP domain-containing protein -
  EL310_RS13780 - 823240..823368 (+) 129 WP_009347251.1 hypothetical protein -
  EL310_RS05045 (NCTC3372_00866) - 823391..824116 (-) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  EL310_RS05050 (NCTC3372_00867) ysxA/radC 824189..824866 (-) 678 WP_002246220.1 RadC family protein Machinery gene
  EL310_RS13785 - 824893..825015 (+) 123 WP_255265604.1 hypothetical protein -
  EL310_RS05055 (NCTC3372_00868) gshA 824989..826338 (-) 1350 WP_002213445.1 glutamate--cysteine ligase -
  EL310_RS05060 (NCTC3372_00869) leuC 826598..828007 (+) 1410 WP_002230498.1 3-isopropylmalate dehydratase large subunit -
  EL310_RS05065 (NCTC3372_00870) - 828104..828358 (+) 255 WP_002213442.1 hypothetical protein -
  EL310_RS05070 (NCTC3372_00871) leuD 828420..829061 (+) 642 WP_002241612.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25024.85 Da        Isoelectric Point: 5.7262

>NTDB_id=1003435 EL310_RS05050 WP_002246220.1 824189..824866(-) (ysxA/radC) [Neisseria meningitidis strain NCTC3372]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQFGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=1003435 EL310_RS05050 WP_002246220.1 824189..824866(-) (ysxA/radC) [Neisseria meningitidis strain NCTC3372]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTAGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACCGTTGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGTTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGTGAAATTGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGACAGTTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378