Detailed information NTG1003127

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABHM63_RS22170
• Genome accession: NZ_CP156901
• Coordinates: 4784376..4785242 (+)
• Length: 288 a.a.
• NCBI ID: WP_004575720.1
• Uniprot ID: -
• Organism: Pseudomonas kurunegalensis strain 2024CK-00038
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4779376..4790242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABHM63_RS22145 (ABHM63_22135)	-	4780082..4780471 (-)	390	WP_003247529.1	hypothetical protein	-
ABHM63_RS22150 (ABHM63_22140)	-	4780464..4781864 (-)	1401	WP_003247530.1	PAAR domain-containing protein	-
ABHM63_RS22160 (ABHM63_22150)	-	4782538..4782948 (-)	411	WP_004575718.1	pilin	-
ABHM63_RS22165 (ABHM63_22155)	-	4783165..4784373 (+)	1209	WP_004575719.1	type II secretion system F family protein	-
ABHM63_RS22170 (ABHM63_22160)	pilD	4784376..4785242 (+)	867	WP_004575720.1	A24 family peptidase	Machinery gene
ABHM63_RS22175 (ABHM63_22165)	coaE	4785242..4785865 (+)	624	WP_004575721.1	dephospho-CoA kinase	-
ABHM63_RS22180 (ABHM63_22170)	yacG	4785862..4786062 (+)	201	WP_003247540.1	DNA gyrase inhibitor YacG	-
ABHM63_RS22185 (ABHM63_22175)	-	4786250..4786957 (-)	708	WP_347783735.1	energy-coupling factor ABC transporter permease	-
ABHM63_RS22190 (ABHM63_22180)	-	4787044..4787475 (+)	432	WP_004577273.1	hypothetical protein	-
ABHM63_RS22195 (ABHM63_22185)	-	4787531..4788160 (+)	630	WP_003247546.1	DUF1780 domain-containing protein	-
ABHM63_RS22200 (ABHM63_22190)	-	4788293..4788466 (+)	174	WP_004577274.1	DUF3094 domain-containing protein	-
ABHM63_RS22205 (ABHM63_22195)	-	4788551..4789846 (+)	1296	WP_004577275.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31782.83 Da
• Isoelectric Point: 7.9101

>NTDB_id=1003127 ABHM63_RS22170 WP_004575720.1 4784376..4785242(+) (pilD) [Pseudomonas kurunegalensis strain 2024CK-00038]
MTLWALLAEQPAYFLTLATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTTQHARFDLCLPASRCPHCAHRIRA
WENIPVISYLALGGRCSSCKNRISLRYPVVEVASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDADHQLLPDVLVL
PTMWLGLIVNAFGIHVPLADALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRFRRHALGTAIPFGPYLAIAGWIAVLWGDEIYASYIQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=1003127 ABHM63_RS22170 WP_004575720.1 4784376..4785242(+) (pilD) [Pseudomonas kurunegalensis strain 2024CK-00038]
ATGACTTTATGGGCTTTGCTGGCTGAACAGCCAGCGTATTTCCTCACCCTTGCCACGGTGCTCGGCCTGCTGGTGGGCAG
CTTTATCAACGTGCTGGTATATCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAGGCGCAAGAGGTGTTGGGGC
TGCCGACCACGCAGCACGCGCGTTTCGACCTGTGCCTGCCCGCCTCCCGGTGCCCACACTGCGCGCACCGGATTCGTGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTA
CCCGGTAGTGGAAGTGGCCAGCGCGCTGCTGTCGCTGGTAGTGGCCTGGCGCTTCGGCGCTTCGGTAGAGGCGTTGCTGG
CGTTGCCGCTGACCTGGTGCCTGCTGGCGCTGAGCCTGATCGATGCGGACCACCAGCTGCTGCCGGATGTGCTGGTGCTG
CCGACCATGTGGCTAGGGCTGATCGTCAATGCCTTTGGCATCCATGTGCCCCTGGCCGACGCACTGTGGGGCGCAGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCG
CTTGTTGGCCTGTGCTTGCTGCGTTTTCGCCGGCATGCCTTGGGCACGGCTATCCCGTTTGGCCCTTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATACAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.986	96.181	0.5
pilD	Acinetobacter baumannii D1279779	49.11	97.569	0.479
pilD	Acinetobacter nosocomialis M2	48.399	97.569	0.472
pilD	Vibrio campbellii strain DS40M4	48.727	95.486	0.465
pilD	Neisseria gonorrhoeae MS11	48.327	93.403	0.451