Detailed information NTG1003118

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ABHM63_RS05085
• Genome accession: NZ_CP156901
• Coordinates: 1096664..1098880 (+)
• Length: 738 a.a.
• NCBI ID: WP_004575949.1
• Uniprot ID: -
• Organism: Pseudomonas kurunegalensis strain 2024CK-00038
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1091664..1103880

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABHM63_RS05065 (ABHM63_05060)	-	1093540..1094163 (+)	624	WP_003247126.1	glutathione S-transferase	-
ABHM63_RS05070 (ABHM63_05065)	-	1094297..1095229 (+)	933	WP_003247127.1	ABC transporter ATP-binding protein	-
ABHM63_RS05075 (ABHM63_05070)	-	1095226..1096005 (+)	780	WP_003247128.1	ABC transporter permease	-
ABHM63_RS05080 (ABHM63_05075)	-	1096015..1096521 (-)	507	Protein_974	DUF2062 domain-containing protein	-
ABHM63_RS05085 (ABHM63_05080)	comA	1096664..1098880 (+)	2217	WP_004575949.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ABHM63_RS05090 (ABHM63_05085)	exbB	1099036..1099671 (+)	636	WP_003247132.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ABHM63_RS05095 (ABHM63_05090)	-	1099668..1100102 (+)	435	WP_003247134.1	biopolymer transporter ExbD	-
ABHM63_RS05100 (ABHM63_05095)	lpxK	1100102..1101103 (+)	1002	WP_003247136.1	tetraacyldisaccharide 4'-kinase	-
ABHM63_RS05105 (ABHM63_05100)	-	1101148..1101333 (+)	186	WP_003247142.1	Trm112 family protein	-
ABHM63_RS05110 (ABHM63_05105)	kdsB	1101330..1102094 (+)	765	WP_003247143.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABHM63_RS05115 (ABHM63_05110)	-	1102094..1102558 (+)	465	WP_004575950.1	low molecular weight protein-tyrosine-phosphatase	-
ABHM63_RS05120 (ABHM63_05115)	murB	1102555..1103574 (+)	1020	WP_003247146.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 738 a.a.
• Molecular weight: 79594.52 Da
• Isoelectric Point: 10.4818

>NTDB_id=1003118 ABHM63_RS05085 WP_004575949.1 1096664..1098880(+) (comA) [Pseudomonas kurunegalensis strain 2024CK-00038]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSQFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAQGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGMAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLLALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLAGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALPWWAWLLVCLGALLLLLPRGVPLRGLGGVMLLALW
VPREPVPFGQIEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHAGGAV
AIARGLPIKRIIGGEALVDVPLQPCASGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDMEVAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAVEGALRLVLGRHG
EVEGVRRQRRFWRDVGGG

Nucleotide

• Length: 2217 bp

>NTDB_id=1003118 ABHM63_RS05085 WP_004575949.1 1096664..1098880(+) (comA) [Pseudomonas kurunegalensis strain 2024CK-00038]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTGCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCAGTTTACCCGCGTATGGCCGTTGGGATGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGCGGGTTTGCCGGCCCGCACTGCACAAGGCGTGCGTTTCGAGCTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGTTTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AACGCCCGGCCGGGCTGCTGAACCCGCACGGGCCTGACCGGGAAGCGCAGTTGCTGGCGCGACGGGTGGGGGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGGCAGGCAGCGCTGGTGGCACTGGTGCTTGGCGATGGTGCGGGCATGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATTGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGCGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCGGGTGGTGGGGTGCCAGTGCAGCGGGCCTGTCTGATGCTGGCCGTGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGCTTTTTTTCCGTTGCTGCTTGCACTGGTCGCTGTGCTGGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGGGG
TTGGCGGCCCTGGCAGGCCTGGACACGAGCGCAATGGGTGATCGCCGTCGGCTTGCTGCCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCACCGCTGGCCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCGTTGGCGTTG
TTGGGCACGCTGATGTTGCCGCTGGCGGGCGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAACAGCGCCCGGCATGGGTGCCGCCGGCCCTGCCGTGGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGCGCTGTTGCTTTTGCTGCCTCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTACCCAGGGAGCCGGTGCCGTTTGGCCAAATCGAGGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCGGTGCTCTTGCG
TACGCGGCATCACAGCCTGCTTTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACTTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGCTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCATGCCGATCATGCGGGCGGGGCCGTG
GCCATTGCGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCGCTGGTTGATGTTCCGTTGCAGCCGTGTGCCAG
TGGCGAGCAATGGGACTGGGATGGCGTGCGTTTTTCGTTGTGGCGCTGGGTGGACGGGCAGAGCAGTAATGACCGTTCCT
GTGTGCTGTTGGTCGAGGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGTTGCTGCCGAACGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGCTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGTTTCGGGCACCCCCACGTGCAGGTGGTCG
AGCGGTATGGGCGGCATGGGGTGGTGATGCATGATACGGCGGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GAGGTTGAGGGTGTGCGCCGACAGCGGCGATTCTGGCGTGATGTGGGGGGTGGCTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (11-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-674)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	58.252	97.696	0.569
comA	Ralstonia pseudosolanacearum GMI1000	34.371	100	0.374