Detailed information NTG1003023

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABEF79_RS14425
• Genome accession: NZ_CP156810
• Coordinates: 2902566..2903426 (+)
• Length: 286 a.a.
• NCBI ID: WP_347456716.1
• Uniprot ID: -
• Organism: Acinetobacter sp. ANC 7454
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2897566..2908426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABEF79_RS14405 (ABEF79_14405)	secG	2898178..2898507 (-)	330	WP_347453474.1	preprotein translocase subunit SecG	-
ABEF79_RS14410 (ABEF79_14410)	tpiA	2898521..2899312 (-)	792	WP_347453473.1	triose-phosphate isomerase	-
ABEF79_RS14415 (ABEF79_14415)	pilB	2899596..2901305 (+)	1710	WP_347460796.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABEF79_RS14420 (ABEF79_14420)	pilC	2901337..2902566 (+)	1230	WP_347456717.1	type II secretion system F family protein	Machinery gene
ABEF79_RS14425 (ABEF79_14425)	pilD	2902566..2903426 (+)	861	WP_347456716.1	A24 family peptidase	Machinery gene
ABEF79_RS14430 (ABEF79_14430)	coaE	2903428..2904027 (+)	600	WP_347453469.1	dephospho-CoA kinase	-
ABEF79_RS14435 (ABEF79_14435)	-	2904052..2904972 (-)	921	WP_347453468.1	DMT family transporter	-
ABEF79_RS14440 (ABEF79_14440)	rlmB	2905009..2905758 (-)	750	WP_347453467.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABEF79_RS14445 (ABEF79_14445)	-	2905911..2906234 (-)	324	WP_034587531.1	pyrimidine/purine nucleoside phosphorylase	-
ABEF79_RS14450 (ABEF79_14450)	recN	2906648..2908309 (+)	1662	WP_347453466.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31987.31 Da
• Isoelectric Point: 8.0584

>NTDB_id=1003023 ABEF79_RS14425 WP_347456716.1 2902566..2903426(+) (pilD) [Acinetobacter sp. ANC 7454]
MQEFILYFTQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDESKITLSKPASTCPKCQTP
IRWYQNIPLISWLALRGKCGSCHNPISIRYPFIEILTAVCALIVVAVFGPTIQMLFGLVLTYVLIALTFIDFDTQLLPDR
FTLPLAALGLGINSYSIYTSPSSAIWGYIIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKVRKENLPFAFGPYIAIAGWIAFLWGEQIMKAYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=1003023 ABEF79_RS14425 WP_347456716.1 2902566..2903426(+) (pilD) [Acinetobacter sp. ANC 7454]
ATGCAAGAATTTATTTTATATTTCACACAAAACCCGACTGCGCTCTATATCGCAGTCGGGCTTTTTAGCCTCTGTATCGG
CAGTTTTCTAAATGTAGTGATTTACCGCACGCCGAAAATGATGGAACAAGAATGGAGAACAGACTGCCAGCTGTTTTTAC
ACCCAGATCAGCCGATCATTGATGAAAGCAAAATTACTCTCAGCAAACCAGCATCCACTTGTCCGAAATGCCAGACGCCA
ATTCGATGGTATCAGAATATTCCCTTGATCAGTTGGCTGGCACTGCGTGGTAAATGTGGCTCCTGCCATAATCCAATCAG
TATCCGATATCCATTTATTGAGATTCTGACTGCAGTCTGTGCGCTTATTGTTGTGGCTGTGTTCGGTCCAACAATACAGA
TGCTGTTTGGTCTAGTGCTAACTTATGTCCTGATTGCACTCACCTTTATCGACTTCGATACACAGCTCCTACCAGATCGC
TTTACCCTGCCACTCGCTGCACTGGGTCTAGGAATTAATAGCTACAGTATTTATACCTCACCCTCTTCGGCGATCTGGGG
TTATATCATTGGCTTTCTATGCCTTTGGGTAGTGTATTACCTGTTTAAAATCGTGACCGGCAAGGAAGGAATGGGCTATG
GCGACTTCAAATTACTGGCTGCGCTAGGGGCCTGGATGGGCCCACTGATGCTGCCGCTGATCGTATTACTATCCTCACTA
GTCGGTGCCATTATCGGCATCATCCTATTGAAAGTCCGCAAAGAAAACCTGCCTTTTGCCTTTGGCCCTTATATTGCCAT
TGCTGGCTGGATTGCGTTCCTTTGGGGTGAACAGATTATGAAAGCATATTTGGGTCAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	82.105	99.65	0.818
pilD	Acinetobacter baumannii D1279779	81.754	99.65	0.815
pilD	Vibrio cholerae strain A1552	55.805	93.357	0.521
pilD	Vibrio campbellii strain DS40M4	50.896	97.552	0.497
pilD	Neisseria gonorrhoeae MS11	46.715	95.804	0.448