Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ABEF88_RS10005 Genome accession   NZ_CP156804
Coordinates   1972411..1972824 (-) Length   137 a.a.
NCBI ID   WP_347452847.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7881     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1967411..1977824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF88_RS09975 (ABEF88_09975) tadA 1967675..1968196 (-) 522 WP_347452842.1 tRNA adenosine(34) deaminase TadA -
  ABEF88_RS09980 (ABEF88_09980) - 1968200..1969324 (-) 1125 WP_034587659.1 enoyl-CoA hydratase/isomerase family protein -
  ABEF88_RS09985 (ABEF88_09985) ung 1969321..1970037 (-) 717 WP_347452843.1 uracil-DNA glycosylase -
  ABEF88_RS09990 (ABEF88_09990) - 1970083..1970679 (-) 597 WP_347452844.1 6-carboxytetrahydropterin synthase -
  ABEF88_RS09995 (ABEF88_09995) gspK 1970825..1971772 (-) 948 WP_347452845.1 type II secretion system minor pseudopilin GspK -
  ABEF88_RS10000 (ABEF88_10000) xcpW 1971782..1972414 (-) 633 WP_347452846.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABEF88_RS10005 (ABEF88_10005) xcpV 1972411..1972824 (-) 414 WP_347452847.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABEF88_RS10010 (ABEF88_10010) - 1972922..1973482 (-) 561 WP_347452848.1 type II secretion system protein -
  ABEF88_RS10015 (ABEF88_10015) - 1973492..1974106 (-) 615 WP_034587650.1 TetR/AcrR family transcriptional regulator -
  ABEF88_RS10020 (ABEF88_10020) - 1974150..1974923 (-) 774 WP_347452849.1 TatD family hydrolase -
  ABEF88_RS10025 (ABEF88_10025) - 1974952..1975293 (-) 342 WP_034587646.1 PilZ domain-containing protein -
  ABEF88_RS10030 (ABEF88_10030) - 1975309..1976295 (-) 987 WP_347452850.1 DNA polymerase III subunit delta' -
  ABEF88_RS10035 (ABEF88_10035) kdsB 1976310..1977071 (-) 762 WP_347452851.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15107.16 Da        Isoelectric Point: 8.7225

>NTDB_id=1002977 ABEF88_RS10005 WP_347452847.1 1972411..1972824(-) (xcpV) [Acinetobacter thermotolerans strain ANC 7881]
MPLRSSITRLNRASGFTLLEVMVALAIFATAAMALTKVAMQYTQSTAHAILRTKAQFVALNEAAQMEINQEWLTGTSSRQ
TTHQGETWQIDKKSEPTISPNVQRVDIQVSIVNADTGQVESGVSSLVFFNHRVNQTQ

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1002977 ABEF88_RS10005 WP_347452847.1 1972411..1972824(-) (xcpV) [Acinetobacter thermotolerans strain ANC 7881]
ATGCCGCTCAGGTCGAGTATTACTCGACTTAATCGTGCCTCAGGTTTTACTTTGCTTGAAGTGATGGTCGCACTTGCCAT
CTTTGCGACTGCAGCCATGGCGCTGACCAAAGTTGCCATGCAGTATACCCAGTCGACTGCGCATGCCATTTTGCGTACCA
AAGCCCAGTTTGTAGCTTTAAATGAAGCTGCACAAATGGAAATTAATCAGGAATGGCTTACGGGAACTTCATCTCGACAA
ACTACACATCAGGGTGAAACCTGGCAGATTGATAAAAAATCTGAACCGACGATTAGCCCCAATGTGCAACGTGTGGATAT
TCAGGTCAGCATCGTCAATGCAGATACCGGGCAGGTGGAATCAGGCGTCAGCAGTCTGGTGTTCTTTAATCATCGGGTGA
ATCAGACACAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-35)

Type II secretion system (T2SS), protein I (T2SSI)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

70.492

89.051

0.628

Multiple sequence alignment