Detailed information NTG1002976

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: ABEF88_RS10000
• Genome accession: NZ_CP156804
• Coordinates: 1971782..1972414 (-)
• Length: 210 a.a.
• NCBI ID: WP_347452846.1
• Uniprot ID: -
• Organism: Acinetobacter thermotolerans strain ANC 7881
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1966782..1977414

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABEF88_RS09970 (ABEF88_09970)	-	1967192..1967623 (-)	432	WP_347452841.1	SRPBCC family protein	-
ABEF88_RS09975 (ABEF88_09975)	tadA	1967675..1968196 (-)	522	WP_347452842.1	tRNA adenosine(34) deaminase TadA	-
ABEF88_RS09980 (ABEF88_09980)	-	1968200..1969324 (-)	1125	WP_034587659.1	enoyl-CoA hydratase/isomerase family protein	-
ABEF88_RS09985 (ABEF88_09985)	ung	1969321..1970037 (-)	717	WP_347452843.1	uracil-DNA glycosylase	-
ABEF88_RS09990 (ABEF88_09990)	-	1970083..1970679 (-)	597	WP_347452844.1	6-carboxytetrahydropterin synthase	-
ABEF88_RS09995 (ABEF88_09995)	gspK	1970825..1971772 (-)	948	WP_347452845.1	type II secretion system minor pseudopilin GspK	-
ABEF88_RS10000 (ABEF88_10000)	xcpW	1971782..1972414 (-)	633	WP_347452846.1	type II secretion system minor pseudopilin GspJ	Machinery gene
ABEF88_RS10005 (ABEF88_10005)	xcpV	1972411..1972824 (-)	414	WP_347452847.1	type II secretion system minor pseudopilin GspI	Machinery gene
ABEF88_RS10010 (ABEF88_10010)	-	1972922..1973482 (-)	561	WP_347452848.1	type II secretion system protein	-
ABEF88_RS10015 (ABEF88_10015)	-	1973492..1974106 (-)	615	WP_034587650.1	TetR/AcrR family transcriptional regulator	-
ABEF88_RS10020 (ABEF88_10020)	-	1974150..1974923 (-)	774	WP_347452849.1	TatD family hydrolase	-
ABEF88_RS10025 (ABEF88_10025)	-	1974952..1975293 (-)	342	WP_034587646.1	PilZ domain-containing protein	-
ABEF88_RS10030 (ABEF88_10030)	-	1975309..1976295 (-)	987	WP_347452850.1	DNA polymerase III subunit delta'	-
ABEF88_RS10035 (ABEF88_10035)	kdsB	1976310..1977071 (-)	762	WP_347452851.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 210 a.a.
• Molecular weight: 24065.13 Da
• Isoelectric Point: 5.2961

>NTDB_id=1002976 ABEF88_RS10000 WP_347452846.1 1971782..1972414(-) (xcpW) [Acinetobacter thermotolerans strain ANC 7881]
MKKNGFTLVELLVAIAIFAILTALGWRVFDHVRVTRDQNTVHEQKLNQLQQGYQQILRDMVQTVPLTANFNGDIQPALVL
QNGQFNFSKTGVTDPLEQGIAPDERVEYQYRADEQKVYRLKYRNLNQTGRDQPESSVLISDVEQFQITALNPNELSQWPE
SGLDLNKIENKQQLPKGIKINLTVQGVQYEWLFSLLNTNYLNNNNNISSS

Nucleotide

• Length: 633 bp

>NTDB_id=1002976 ABEF88_RS10000 WP_347452846.1 1971782..1972414(-) (xcpW) [Acinetobacter thermotolerans strain ANC 7881]
ATGAAAAAGAACGGTTTTACTCTGGTTGAACTTCTTGTTGCGATTGCAATCTTTGCCATTCTGACGGCATTGGGCTGGCG
GGTCTTTGATCATGTAAGAGTCACACGGGATCAGAATACCGTTCATGAGCAAAAACTGAACCAGTTGCAGCAAGGCTATC
AGCAGATTCTGCGAGATATGGTGCAAACCGTACCATTAACCGCAAATTTTAATGGTGATATTCAGCCAGCCTTGGTATTG
CAGAATGGCCAATTTAATTTCAGTAAAACTGGTGTGACTGATCCACTGGAGCAGGGTATTGCCCCTGATGAGCGGGTAGA
ATATCAGTACCGTGCCGATGAGCAGAAAGTCTATCGATTAAAATATAGGAATTTGAACCAGACCGGACGAGATCAGCCAG
AATCCAGTGTGCTCATTAGTGATGTAGAGCAATTCCAGATTACTGCACTCAATCCAAACGAATTAAGCCAATGGCCTGAA
AGCGGATTAGATTTAAATAAAATTGAAAACAAGCAACAGTTGCCTAAAGGGATCAAGATCAATCTGACGGTGCAGGGTGT
GCAGTATGAGTGGCTGTTTAGTCTGCTCAATACTAATTATCTTAATAATAACAATAACATCAGTAGTTCTTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (58-192)

• Prokaryotic N-terminal methylation motif (N_methyl) (2-24)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	56.701	92.381	0.524