Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABEF88_RS01475 Genome accession   NZ_CP156804
Coordinates   307040..308605 (-) Length   521 a.a.
NCBI ID   WP_347453451.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7881     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 302040..313605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF88_RS01460 (ABEF88_01460) gpmI 302839..304386 (+) 1548 WP_347453450.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABEF88_RS01465 (ABEF88_01465) - 304407..305582 (+) 1176 WP_034587576.1 S41 family peptidase -
  ABEF88_RS01470 (ABEF88_01470) pilR 305588..307018 (-) 1431 WP_161788389.1 sigma-54 dependent transcriptional regulator Regulator
  ABEF88_RS01475 (ABEF88_01475) pilS 307040..308605 (-) 1566 WP_347453451.1 ATP-binding protein Regulator
  ABEF88_RS01480 (ABEF88_01480) - 308644..309279 (-) 636 WP_034587571.1 response regulator -
  ABEF88_RS01485 (ABEF88_01485) - 309500..310549 (+) 1050 WP_347453452.1 serine hydrolase -
  ABEF88_RS01490 (ABEF88_01490) thrC 310609..311748 (-) 1140 WP_347453453.1 threonine synthase -
  ABEF88_RS01495 (ABEF88_01495) - 311806..313110 (-) 1305 WP_034587565.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59373.71 Da        Isoelectric Point: 6.4506

>NTDB_id=1002953 ABEF88_RS01475 WP_347453451.1 307040..308605(-) (pilS) [Acinetobacter thermotolerans strain ANC 7881]
MSQRSSYSELNQYLLGTWYAAYRLIISTGLLLIFLLTYPEYNSELAHPQLYHYVLSSFIAISLGQLFLLKYVKKFIHKQL
TAIFIVDVCALSLLTLATSGANLHLSMLFVITIFAASILLNAQKALVITLIAVISITYQHFIVSIFTLSSLGNIGNSAIL
AFLFCVVYGIGQIAVRRFQILENLNFSQSMELYRLQNINRYILEQIDTGYLVLDENCHVVLSNPAACHLLGIEQTYSFDK
FPLYQFQPDLFELIRFENLENGERFQFESQQSRFNIHVQVQKLIVPHQTLMLLVLQDARKINQEVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLLPGSEQEQQEVLHSMISKQATRINRIIEDTLNMVKNKETRPVPIQLNEFIPQCLHEDLADIAD
HIKFNIDMRLDIQFDEAQLRQVLINLLRNAVRHNDPTVGPVELKVHPYEHKVWIDVRDFGDGVTPADQSLLFKPFFSNSI
NGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=1002953 ABEF88_RS01475 WP_347453451.1 307040..308605(-) (pilS) [Acinetobacter thermotolerans strain ANC 7881]
ATGTCGCAGCGATCTTCTTATTCAGAGCTGAATCAGTATCTGCTCGGTACCTGGTATGCGGCATATCGCTTAATTATCAG
CACGGGCCTGCTGCTGATTTTTCTGCTGACCTATCCGGAATATAACAGCGAACTAGCCCATCCTCAGCTCTATCATTATG
TGCTGAGCAGTTTTATTGCGATTTCACTGGGGCAGCTGTTTCTGCTGAAATATGTCAAGAAATTTATTCACAAACAGCTG
ACTGCGATTTTTATTGTTGATGTCTGCGCCCTAAGCCTGCTGACACTCGCCACCAGCGGGGCCAATCTGCATCTCAGTAT
GCTGTTTGTCATCACCATCTTTGCCGCTTCAATATTACTGAATGCACAAAAGGCACTGGTGATTACCCTGATTGCGGTAA
TCAGTATCACTTATCAGCATTTTATTGTCAGTATTTTTACCCTGTCCTCACTTGGGAATATCGGCAATAGTGCGATTCTG
GCTTTCCTGTTCTGTGTGGTTTACGGCATCGGACAGATTGCAGTACGGCGTTTTCAGATTCTGGAAAACCTGAACTTTTC
CCAGTCCATGGAACTGTACCGGCTGCAGAATATTAACCGCTATATTCTGGAACAGATTGATACCGGCTATCTGGTGCTGG
ATGAGAACTGCCATGTAGTGCTGAGTAATCCAGCCGCCTGTCATCTGCTTGGAATTGAGCAGACCTACTCTTTTGACAAG
TTTCCACTCTATCAGTTTCAACCCGATCTGTTTGAACTGATTCGCTTTGAGAATCTGGAAAATGGTGAGCGTTTCCAGTT
TGAGTCACAGCAGAGCCGGTTTAATATCCATGTACAAGTCCAGAAACTGATTGTGCCACACCAGACCCTTATGCTACTGG
TGCTGCAGGATGCACGAAAAATCAATCAAGAGGTGCAGCAACTTAAACTGGCAGCATTGGGGCAACTTTCTGCCAGTATC
GCGCATGAAATCCGTAATCCTTTAGCTGCCATTGTGCAGGCCAATGACCTGTTGCCCGGTTCAGAACAGGAACAGCAGGA
AGTCCTGCACAGCATGATCAGCAAACAGGCCACCCGGATTAACCGGATTATTGAAGACACGCTGAATATGGTGAAAAATA
AAGAAACTCGCCCAGTACCGATTCAGCTCAATGAATTTATTCCGCAATGCCTACATGAGGATCTGGCTGATATTGCGGAT
CACATTAAATTCAATATCGACATGCGTCTGGATATCCAGTTTGATGAAGCCCAGCTGCGACAGGTGCTGATCAATCTGTT
ACGCAATGCAGTACGGCATAATGACCCGACTGTAGGACCAGTTGAGTTAAAGGTACATCCTTATGAGCATAAGGTCTGGA
TTGATGTACGAGATTTTGGCGATGGCGTGACGCCAGCCGATCAAAGCTTATTATTTAAACCGTTTTTCAGTAACTCGATT
AATGGCACAGGACTCGGGCTCTATCTCTCCCATAGTTTCTGTGAAGCCAATCAGGCACAATTGAATTATATACAACAAGA
ACAGGGTGCTTGCTTCAGGATCAGCTGCCAGCGCATTACTGTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

56.238

96.929

0.545

Multiple sequence alignment