Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABEF84_RS02240 Genome accession   NZ_CP156795
Coordinates   459254..459889 (-) Length   211 a.a.
NCBI ID   WP_347453547.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7912     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 454254..464889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF84_RS02205 (ABEF84_02205) - 454424..455059 (+) 636 WP_034586935.1 phospholipid-binding protein MlaC -
  ABEF84_RS02210 (ABEF84_02210) - 455072..455362 (+) 291 WP_034586937.1 STAS domain-containing protein -
  ABEF84_RS02215 (ABEF84_02215) - 455380..456438 (-) 1059 WP_034586922.1 RNA-guided endonuclease TnpB family protein -
  ABEF84_RS02220 (ABEF84_02220) tnpA 456459..456872 (+) 414 WP_075167884.1 IS200/IS605 family transposase -
  ABEF84_RS02225 (ABEF84_02225) - 457062..458075 (-) 1014 WP_034586940.1 CorA family divalent cation transporter -
  ABEF84_RS02230 (ABEF84_02230) - 458229..458819 (+) 591 WP_034586942.1 TIGR00730 family Rossman fold protein -
  ABEF84_RS02235 (ABEF84_02235) - 458850..459251 (+) 402 WP_034586945.1 NUDIX domain-containing protein -
  ABEF84_RS02240 (ABEF84_02240) comF 459254..459889 (-) 636 WP_347453547.1 phosphoribosyltransferase family protein Machinery gene
  ABEF84_RS02245 (ABEF84_02245) recG 459876..461921 (-) 2046 WP_034586949.1 ATP-dependent DNA helicase RecG -
  ABEF84_RS02250 (ABEF84_02250) - 461956..462756 (+) 801 WP_034586950.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24255.47 Da        Isoelectric Point: 9.0883

>NTDB_id=1002881 ABEF84_RS02240 WP_347453547.1 459254..459889(-) (comF) [Acinetobacter thermotolerans strain ANC 7912]
MPMFKLIQQGKHWLGKLQPCQLCHHDYQAIHSVCQDCWQQLPWACQTVQRQEIPVQIACHYAYPMDRLIQLFKYEQKLYL
ENLLAGTLLSLNLPKVSAVVPMPISTEKLVQRGYNQSLLLAKHVARHLNVPVWQPITRLKQHSQKGLCRLERIEDIDTQF
QMNTSSKLRYRKVLIIDDVITTGSSIRALSQKLEELGCQQINAACVAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1002881 ABEF84_RS02240 WP_347453547.1 459254..459889(-) (comF) [Acinetobacter thermotolerans strain ANC 7912]
ATGCCTATGTTTAAGCTGATTCAACAAGGCAAGCATTGGCTAGGCAAGTTACAGCCCTGCCAGCTCTGTCATCATGATTA
TCAAGCGATACATTCAGTCTGTCAGGACTGCTGGCAGCAATTGCCCTGGGCATGTCAGACAGTACAACGACAGGAAATAC
CGGTACAGATTGCCTGCCATTATGCCTATCCGATGGACCGGCTAATTCAGCTTTTTAAATATGAACAGAAACTGTATTTA
GAAAATCTGCTGGCAGGTACCCTGCTCAGCTTAAACTTACCTAAAGTCAGTGCCGTGGTACCAATGCCGATCTCAACCGA
AAAGCTGGTACAGCGTGGTTATAACCAGTCATTACTACTCGCCAAGCATGTCGCCAGACATTTGAATGTGCCAGTGTGGC
AACCGATAACCCGACTTAAGCAGCATTCACAAAAAGGCTTATGCCGGCTGGAACGAATTGAAGATATTGATACGCAGTTC
CAGATGAATACTTCATCCAAACTGCGTTACCGCAAGGTACTGATTATTGATGATGTCATCACCACAGGCAGCTCAATCCG
AGCACTCAGCCAGAAGCTGGAAGAATTGGGCTGCCAACAGATTAATGCTGCTTGTGTGGCAGGTGCCAAACTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.522

98.104

0.555
  comF Acinetobacter baumannii D1279779

56.039

98.104

0.55

Multiple sequence alignment