Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | ABEF84_RS01920 | Genome accession | NZ_CP156795 |
| Coordinates | 402804..403256 (+) | Length | 150 a.a. |
| NCBI ID | WP_347454473.1 | Uniprot ID | - |
| Organism | Acinetobacter thermotolerans strain ANC 7912 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 368363..417820 | 402804..403256 | within | 0 |
Gene organization within MGE regions
Location: 368363..417820
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABEF84_RS01760 (ABEF84_01760) | - | 368363..370186 (+) | 1824 | WP_347473751.1 | hypothetical protein | - |
| ABEF84_RS01765 (ABEF84_01765) | - | 370256..371104 (+) | 849 | WP_404798973.1 | glycosyltransferase family 2 protein | - |
| ABEF84_RS01770 (ABEF84_01770) | - | 371108..372823 (+) | 1716 | WP_347473753.1 | ABC transporter ATP-binding protein | - |
| ABEF84_RS01775 (ABEF84_01775) | - | 372921..373955 (+) | 1035 | WP_347473754.1 | glycosyltransferase | - |
| ABEF84_RS01780 (ABEF84_01780) | - | 373977..374360 (+) | 384 | WP_347473755.1 | transposase | - |
| ABEF84_RS01785 (ABEF84_01785) | - | 374382..374765 (+) | 384 | WP_347473755.1 | transposase | - |
| ABEF84_RS01790 (ABEF84_01790) | - | 374929..375312 (+) | 384 | WP_001055585.1 | transposase | - |
| ABEF84_RS01795 (ABEF84_01795) | tnpB | 375309..375644 (+) | 336 | WP_000618091.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| ABEF84_RS01800 (ABEF84_01800) | tnpC | 375719..377323 (+) | 1605 | WP_347453595.1 | IS66 family transposase | - |
| ABEF84_RS01805 (ABEF84_01805) | - | 377346..377426 (+) | 81 | Protein_343 | IS66 family insertion sequence element accessory protein TnpB | - |
| ABEF84_RS01810 (ABEF84_01810) | tnpB | 377423..377758 (+) | 336 | WP_000618091.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| ABEF84_RS01815 (ABEF84_01815) | tnpC | 377833..379437 (+) | 1605 | WP_347473756.1 | IS66 family transposase | - |
| ABEF84_RS01820 (ABEF84_01820) | - | 379757..381181 (+) | 1425 | WP_347473757.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| ABEF84_RS01825 (ABEF84_01825) | gmd | 381391..382425 (+) | 1035 | WP_347473758.1 | GDP-mannose 4,6-dehydratase | - |
| ABEF84_RS01830 (ABEF84_01830) | - | 382445..383341 (+) | 897 | WP_347473759.1 | GDP-mannose 4,6-dehydratase | - |
| ABEF84_RS01835 (ABEF84_01835) | - | 383398..384825 (+) | 1428 | WP_347473760.1 | glycosyltransferase family 1 protein | - |
| ABEF84_RS01840 (ABEF84_01840) | - | 384908..385993 (+) | 1086 | WP_347473761.1 | glycosyltransferase family 1 protein | - |
| ABEF84_RS01845 (ABEF84_01845) | - | 385994..387022 (-) | 1029 | WP_347473762.1 | glycosyltransferase family 4 protein | - |
| ABEF84_RS01850 (ABEF84_01850) | - | 387019..388197 (-) | 1179 | WP_347454484.1 | glycosyltransferase family 4 protein | - |
| ABEF84_RS01855 (ABEF84_01855) | - | 388285..389919 (+) | 1635 | WP_347454483.1 | Wzy polymerase domain-containing protein | - |
| ABEF84_RS01860 (ABEF84_01860) | bfr | 389987..390451 (-) | 465 | WP_347454482.1 | bacterioferritin | - |
| ABEF84_RS01865 (ABEF84_01865) | - | 390691..390885 (-) | 195 | WP_347453509.1 | bacterioferritin-associated ferredoxin | - |
| ABEF84_RS01870 (ABEF84_01870) | - | 391074..391457 (-) | 384 | WP_347473288.1 | RidA family protein | - |
| ABEF84_RS01875 (ABEF84_01875) | - | 391533..393635 (-) | 2103 | WP_347473287.1 | HD domain-containing protein | - |
| ABEF84_RS01880 (ABEF84_01880) | rpoZ | 393847..394128 (-) | 282 | WP_004650579.1 | DNA-directed RNA polymerase subunit omega | - |
| ABEF84_RS01885 (ABEF84_01885) | gmk | 394203..394826 (-) | 624 | WP_347453512.1 | guanylate kinase | - |
| ABEF84_RS01890 (ABEF84_01890) | ispH | 394961..395911 (+) | 951 | WP_347454479.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| ABEF84_RS01895 (ABEF84_01895) | - | 396075..396560 (+) | 486 | WP_347473286.1 | GspH/FimT family pseudopilin | - |
| ABEF84_RS01900 (ABEF84_01900) | pilV | 396563..397114 (+) | 552 | WP_347473285.1 | type IV pilus modification protein PilV | - |
| ABEF84_RS01905 (ABEF84_01905) | - | 397114..398082 (+) | 969 | WP_347454476.1 | PilW family protein | - |
| ABEF84_RS01910 (ABEF84_01910) | - | 398083..398856 (+) | 774 | WP_347454475.1 | pilus assembly protein | - |
| ABEF84_RS01915 (ABEF84_01915) | - | 398876..402793 (+) | 3918 | WP_347473511.1 | PilC/PilY family type IV pilus protein | - |
| ABEF84_RS01920 (ABEF84_01920) | comE | 402804..403256 (+) | 453 | WP_347454473.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ABEF84_RS01925 (ABEF84_01925) | - | 403250..403693 (+) | 444 | WP_347473284.1 | type IV pilin protein | - |
| ABEF84_RS01930 (ABEF84_01930) | rpsP | 403819..404076 (+) | 258 | WP_034587736.1 | 30S ribosomal protein S16 | - |
| ABEF84_RS01935 (ABEF84_01935) | rimM | 404106..404654 (+) | 549 | WP_347453520.1 | ribosome maturation factor RimM | - |
| ABEF84_RS01940 (ABEF84_01940) | trmD | 404696..405445 (+) | 750 | WP_347454471.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ABEF84_RS01945 (ABEF84_01945) | rplS | 405622..405993 (+) | 372 | WP_004787066.1 | 50S ribosomal protein L19 | - |
| ABEF84_RS01950 (ABEF84_01950) | - | 406055..407038 (-) | 984 | WP_404798936.1 | lipase family alpha/beta hydrolase | - |
| ABEF84_RS01955 (ABEF84_01955) | - | 407574..408605 (-) | 1032 | WP_347454469.1 | lipase secretion chaperone | - |
| ABEF84_RS01960 (ABEF84_01960) | truB | 408761..409666 (+) | 906 | WP_347454468.1 | tRNA pseudouridine(55) synthase TruB | - |
| ABEF84_RS01965 (ABEF84_01965) | - | 409689..410456 (+) | 768 | WP_347454467.1 | TSUP family transporter | - |
| ABEF84_RS01970 (ABEF84_01970) | - | 410584..411051 (+) | 468 | WP_347454466.1 | hemerythrin domain-containing protein | - |
| ABEF84_RS01975 (ABEF84_01975) | - | 411106..411519 (-) | 414 | WP_347454465.1 | hypothetical protein | - |
| ABEF84_RS01980 (ABEF84_01980) | - | 411591..412469 (-) | 879 | WP_347453527.1 | EamA family transporter | - |
| ABEF84_RS01985 (ABEF84_01985) | - | 412653..413529 (-) | 877 | Protein_379 | IS982-like element ISAba825 family transposase | - |
| ABEF84_RS01990 (ABEF84_01990) | - | 413773..414924 (+) | 1152 | WP_347454464.1 | hypothetical protein | - |
| ABEF84_RS01995 (ABEF84_01995) | - | 415047..415220 (+) | 174 | WP_347454463.1 | hypothetical protein | - |
| ABEF84_RS02000 (ABEF84_02000) | - | 415266..415859 (+) | 594 | WP_347454462.1 | hypothetical protein | - |
| ABEF84_RS02005 (ABEF84_02005) | - | 415856..416914 (-) | 1059 | WP_034586922.1 | RNA-guided endonuclease TnpB family protein | - |
| ABEF84_RS02010 (ABEF84_02010) | tnpA | 416935..417348 (+) | 414 | Protein_384 | IS200/IS605 family transposase | - |
| ABEF84_RS02015 (ABEF84_02015) | - | 417503..417820 (+) | 318 | WP_347454461.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17034.39 Da Isoelectric Point: 5.2667
>NTDB_id=1002880 ABEF84_RS01920 WP_347454473.1 402804..403256(+) (comE) [Acinetobacter thermotolerans strain ANC 7912]
MQDSKGFTLIELMIVVVILAIIAAIAIPSYKETIRKNNEAKAQQEILKVAEQLERYRARNFNYRNFTATNVILPDGYSLN
IYDLDSTNKGLGDGVQGRGWFIKVEPPTDPKNYYFLMSSTGLKCKSRLESDVDFKCEPWDDSAQTGSQPW
MQDSKGFTLIELMIVVVILAIIAAIAIPSYKETIRKNNEAKAQQEILKVAEQLERYRARNFNYRNFTATNVILPDGYSLN
IYDLDSTNKGLGDGVQGRGWFIKVEPPTDPKNYYFLMSSTGLKCKSRLESDVDFKCEPWDDSAQTGSQPW
Nucleotide
Download Length: 453 bp
>NTDB_id=1002880 ABEF84_RS01920 WP_347454473.1 402804..403256(+) (comE) [Acinetobacter thermotolerans strain ANC 7912]
ATGCAGGATAGCAAAGGTTTCACCTTGATTGAGCTAATGATTGTGGTGGTGATCCTTGCGATCATTGCTGCAATCGCTAT
ACCAAGCTATAAGGAAACCATCAGGAAAAATAATGAGGCGAAAGCTCAGCAGGAAATATTAAAAGTTGCTGAGCAATTAG
AACGGTATCGTGCCAGAAATTTTAATTATCGAAATTTCACTGCCACGAATGTGATACTTCCTGATGGATATAGTTTAAAT
ATCTATGATTTAGATAGTACCAATAAAGGGTTAGGTGATGGAGTTCAAGGACGAGGATGGTTTATTAAAGTAGAGCCGCC
AACCGATCCTAAAAACTATTATTTTCTTATGAGTAGCACAGGTTTAAAGTGTAAATCACGTTTAGAGAGTGATGTGGATT
TTAAATGTGAGCCTTGGGATGATAGTGCACAAACAGGAAGTCAGCCATGGTAA
ATGCAGGATAGCAAAGGTTTCACCTTGATTGAGCTAATGATTGTGGTGGTGATCCTTGCGATCATTGCTGCAATCGCTAT
ACCAAGCTATAAGGAAACCATCAGGAAAAATAATGAGGCGAAAGCTCAGCAGGAAATATTAAAAGTTGCTGAGCAATTAG
AACGGTATCGTGCCAGAAATTTTAATTATCGAAATTTCACTGCCACGAATGTGATACTTCCTGATGGATATAGTTTAAAT
ATCTATGATTTAGATAGTACCAATAAAGGGTTAGGTGATGGAGTTCAAGGACGAGGATGGTTTATTAAAGTAGAGCCGCC
AACCGATCCTAAAAACTATTATTTTCTTATGAGTAGCACAGGTTTAAAGTGTAAATCACGTTTAGAGAGTGATGTGGATT
TTAAATGTGAGCCTTGGGATGATAGTGCACAAACAGGAAGTCAGCCATGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Acinetobacter baylyi ADP1 |
42.69 |
100 |
0.487 |
| pilY2 | Acinetobacter baumannii D1279779 |
40.26 |
100 |
0.413 |