Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABEF90_RS08990 | Genome accession | NZ_CP156793 |
| Coordinates | 1855778..1856128 (-) | Length | 116 a.a. |
| NCBI ID | WP_034587674.1 | Uniprot ID | - |
| Organism | Acinetobacter thermotolerans strain ANC 7914 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1850778..1861128
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABEF90_RS08960 (ABEF90_08960) | tadA | 1851042..1851563 (-) | 522 | WP_034587661.1 | tRNA adenosine(34) deaminase TadA | - |
| ABEF90_RS08965 (ABEF90_08965) | - | 1851567..1852691 (-) | 1125 | WP_347473664.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABEF90_RS08970 (ABEF90_08970) | ung | 1852688..1853404 (-) | 717 | WP_034587658.1 | uracil-DNA glycosylase | - |
| ABEF90_RS08975 (ABEF90_08975) | - | 1853450..1854046 (-) | 597 | WP_034587657.1 | 6-carboxytetrahydropterin synthase | - |
| ABEF90_RS08980 (ABEF90_08980) | gspK | 1854192..1855139 (-) | 948 | WP_034587656.1 | type II secretion system minor pseudopilin GspK | - |
| ABEF90_RS08985 (ABEF90_08985) | xcpW | 1855149..1855781 (-) | 633 | WP_034587654.1 | type II secretion system protein GspJ | Machinery gene |
| ABEF90_RS08990 (ABEF90_08990) | xcpV | 1855778..1856128 (-) | 351 | WP_034587674.1 | type II secretion system protein GspI | Machinery gene |
| ABEF90_RS08995 (ABEF90_08995) | - | 1856205..1856765 (-) | 561 | WP_347473924.1 | type II secretion system protein | - |
| ABEF90_RS09000 (ABEF90_09000) | - | 1856775..1857389 (-) | 615 | WP_034587650.1 | TetR/AcrR family transcriptional regulator | - |
| ABEF90_RS09005 (ABEF90_09005) | - | 1857433..1858206 (-) | 774 | WP_034587648.1 | TatD family hydrolase | - |
| ABEF90_RS09010 (ABEF90_09010) | - | 1858235..1858576 (-) | 342 | WP_034587646.1 | PilZ domain-containing protein | - |
| ABEF90_RS09015 (ABEF90_09015) | - | 1858592..1859578 (-) | 987 | WP_347473925.1 | DNA polymerase III subunit delta' | - |
| ABEF90_RS09020 (ABEF90_09020) | kdsB | 1859593..1860354 (-) | 762 | WP_034587642.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 116 a.a. Molecular weight: 12808.52 Da Isoelectric Point: 7.2028
>NTDB_id=1002852 ABEF90_RS08990 WP_034587674.1 1855778..1856128(-) (xcpV) [Acinetobacter thermotolerans strain ANC 7914]
MVALAIFATAAMALTKVAMQYTQSTAHAILRTKAQFVALNEAAQMEINQEWLTGTSSRRTIQQGETWQIDKKSEPTISPN
VQRVEIQVSIVNADTGQVESGVSSLVFFNHRVNQTQ
MVALAIFATAAMALTKVAMQYTQSTAHAILRTKAQFVALNEAAQMEINQEWLTGTSSRRTIQQGETWQIDKKSEPTISPN
VQRVEIQVSIVNADTGQVESGVSSLVFFNHRVNQTQ
Nucleotide
Download Length: 351 bp
>NTDB_id=1002852 ABEF90_RS08990 WP_034587674.1 1855778..1856128(-) (xcpV) [Acinetobacter thermotolerans strain ANC 7914]
ATGGTGGCACTTGCGATTTTTGCCACTGCAGCGATGGCATTGACCAAGGTCGCGATGCAATATACCCAATCTACGGCACA
TGCCATTTTGCGTACCAAAGCCCAGTTTGTGGCTCTAAATGAAGCTGCACAAATGGAGATTAATCAGGAATGGTTGACTG
GAACTTCATCTCGACGAACTATACAGCAGGGTGAAACCTGGCAGATTGATAAAAAATCTGAACCGACGATTAGTCCCAAT
GTGCAACGTGTGGAGATTCAGGTCAGCATCGTCAATGCAGATACCGGGCAGGTGGAATCAGGTGTCAGTAGTCTGGTGTT
CTTTAATCATCGGGTGAATCAGACACAATGA
ATGGTGGCACTTGCGATTTTTGCCACTGCAGCGATGGCATTGACCAAGGTCGCGATGCAATATACCCAATCTACGGCACA
TGCCATTTTGCGTACCAAAGCCCAGTTTGTGGCTCTAAATGAAGCTGCACAAATGGAGATTAATCAGGAATGGTTGACTG
GAACTTCATCTCGACGAACTATACAGCAGGGTGAAACCTGGCAGATTGATAAAAAATCTGAACCGACGATTAGTCCCAAT
GTGCAACGTGTGGAGATTCAGGTCAGCATCGTCAATGCAGATACCGGGCAGGTGGAATCAGGTGTCAGTAGTCTGGTGTT
CTTTAATCATCGGGTGAATCAGACACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
67.857 |
96.552 |
0.655 |