Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | ABEF90_RS02205 | Genome accession | NZ_CP156793 |
| Coordinates | 458970..459605 (-) | Length | 211 a.a. |
| NCBI ID | WP_347453547.1 | Uniprot ID | - |
| Organism | Acinetobacter thermotolerans strain ANC 7914 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 440764..476988 | 458970..459605 | within | 0 |
Gene organization within MGE regions
Location: 440764..476988
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABEF90_RS02115 (ABEF90_02115) | - | 441316..441522 (-) | 207 | WP_034582199.1 | hypothetical protein | - |
| ABEF90_RS02120 (ABEF90_02120) | - | 441655..442617 (-) | 963 | WP_075174500.1 | IS30-like element IS18 family transposase | - |
| ABEF90_RS02125 (ABEF90_02125) | hemF | 442839..443789 (-) | 951 | WP_347453545.1 | oxygen-dependent coproporphyrinogen oxidase | - |
| ABEF90_RS02130 (ABEF90_02130) | hemN | 444027..445400 (+) | 1374 | WP_034582205.1 | oxygen-independent coproporphyrinogen III oxidase | - |
| ABEF90_RS02135 (ABEF90_02135) | ribA | 445511..446113 (-) | 603 | WP_347474162.1 | GTP cyclohydrolase II | - |
| ABEF90_RS02140 (ABEF90_02140) | dxs | 446425..448329 (+) | 1905 | WP_347453546.1 | 1-deoxy-D-xylulose-5-phosphate synthase | - |
| ABEF90_RS02145 (ABEF90_02145) | - | 448450..449280 (+) | 831 | WP_034582213.1 | inositol monophosphatase family protein | - |
| ABEF90_RS02150 (ABEF90_02150) | - | 449707..451455 (+) | 1749 | WP_034582215.1 | DEAD/DEAH box helicase | - |
| ABEF90_RS02155 (ABEF90_02155) | - | 451850..452668 (+) | 819 | WP_034586928.1 | ABC transporter ATP-binding protein | - |
| ABEF90_RS02160 (ABEF90_02160) | mlaE | 452665..453444 (+) | 780 | WP_034586930.1 | lipid asymmetry maintenance ABC transporter permease subunit MlaE | - |
| ABEF90_RS02165 (ABEF90_02165) | - | 453444..454121 (+) | 678 | WP_034586933.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| ABEF90_RS02170 (ABEF90_02170) | - | 454140..454775 (+) | 636 | WP_034586935.1 | phospholipid-binding protein MlaC | - |
| ABEF90_RS02175 (ABEF90_02175) | - | 454788..455078 (+) | 291 | WP_034586937.1 | STAS domain-containing protein | - |
| ABEF90_RS02180 (ABEF90_02180) | - | 455096..456154 (-) | 1059 | WP_034586922.1 | RNA-guided endonuclease TnpB family protein | - |
| ABEF90_RS02185 (ABEF90_02185) | tnpA | 456175..456588 (+) | 414 | WP_075167884.1 | IS200/IS605 family transposase | - |
| ABEF90_RS02190 (ABEF90_02190) | - | 456778..457791 (-) | 1014 | WP_034586940.1 | CorA family divalent cation transporter | - |
| ABEF90_RS02195 (ABEF90_02195) | - | 457945..458535 (+) | 591 | WP_034586942.1 | TIGR00730 family Rossman fold protein | - |
| ABEF90_RS02200 (ABEF90_02200) | - | 458566..458967 (+) | 402 | WP_034586945.1 | NUDIX domain-containing protein | - |
| ABEF90_RS02205 (ABEF90_02205) | comF | 458970..459605 (-) | 636 | WP_347453547.1 | phosphoribosyltransferase family protein | Machinery gene |
| ABEF90_RS02210 (ABEF90_02210) | recG | 459592..461637 (-) | 2046 | WP_034586949.1 | ATP-dependent DNA helicase RecG | - |
| ABEF90_RS02215 (ABEF90_02215) | - | 461672..462472 (+) | 801 | WP_034586950.1 | NAD(P)H-binding protein | - |
| ABEF90_RS02220 (ABEF90_02220) | plsB | 462646..465207 (-) | 2562 | WP_034586952.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| ABEF90_RS02225 (ABEF90_02225) | - | 465496..466368 (+) | 873 | WP_347453548.1 | acyl-CoA thioesterase II | - |
| ABEF90_RS02230 (ABEF90_02230) | - | 466465..467693 (-) | 1229 | Protein_427 | transposase | - |
| ABEF90_RS02235 (ABEF90_02235) | tnpA | 467880..468293 (-) | 414 | WP_075167884.1 | IS200/IS605 family transposase | - |
| ABEF90_RS02240 (ABEF90_02240) | - | 468314..469371 (+) | 1058 | Protein_429 | RNA-guided endonuclease InsQ/TnpB family protein | - |
| ABEF90_RS02245 (ABEF90_02245) | - | 469404..469532 (-) | 129 | WP_347474163.1 | hypothetical protein | - |
| ABEF90_RS02250 (ABEF90_02250) | - | 469732..470967 (+) | 1236 | WP_034587497.1 | dicarboxylate/amino acid:cation symporter | - |
| ABEF90_RS02255 (ABEF90_02255) | - | 470964..471383 (-) | 420 | Protein_432 | VOC family protein | - |
| ABEF90_RS02260 (ABEF90_02260) | - | 471481..472440 (-) | 960 | WP_347474255.1 | metal-dependent hydrolase | - |
| ABEF90_RS02265 (ABEF90_02265) | yihA | 472681..473457 (-) | 777 | Protein_434 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| ABEF90_RS02270 (ABEF90_02270) | - | 473560..474000 (-) | 441 | WP_034587494.1 | Rrf2 family transcriptional regulator | - |
| ABEF90_RS02275 (ABEF90_02275) | hmpA | 474086..475294 (-) | 1209 | WP_347456740.1 | NO-inducible flavohemoprotein | - |
Sequence
Protein
Download Length: 211 a.a. Molecular weight: 24255.47 Da Isoelectric Point: 9.0883
>NTDB_id=1002841 ABEF90_RS02205 WP_347453547.1 458970..459605(-) (comF) [Acinetobacter thermotolerans strain ANC 7914]
MPMFKLIQQGKHWLGKLQPCQLCHHDYQAIHSVCQDCWQQLPWACQTVQRQEIPVQIACHYAYPMDRLIQLFKYEQKLYL
ENLLAGTLLSLNLPKVSAVVPMPISTEKLVQRGYNQSLLLAKHVARHLNVPVWQPITRLKQHSQKGLCRLERIEDIDTQF
QMNTSSKLRYRKVLIIDDVITTGSSIRALSQKLEELGCQQINAACVAGAKL
MPMFKLIQQGKHWLGKLQPCQLCHHDYQAIHSVCQDCWQQLPWACQTVQRQEIPVQIACHYAYPMDRLIQLFKYEQKLYL
ENLLAGTLLSLNLPKVSAVVPMPISTEKLVQRGYNQSLLLAKHVARHLNVPVWQPITRLKQHSQKGLCRLERIEDIDTQF
QMNTSSKLRYRKVLIIDDVITTGSSIRALSQKLEELGCQQINAACVAGAKL
Nucleotide
Download Length: 636 bp
>NTDB_id=1002841 ABEF90_RS02205 WP_347453547.1 458970..459605(-) (comF) [Acinetobacter thermotolerans strain ANC 7914]
ATGCCTATGTTTAAGCTGATTCAACAAGGCAAGCATTGGCTAGGCAAGTTACAGCCCTGCCAGCTCTGTCATCATGATTA
TCAAGCGATACATTCAGTCTGTCAGGACTGCTGGCAGCAATTGCCCTGGGCATGTCAGACAGTACAACGACAGGAAATAC
CGGTACAGATTGCCTGCCATTATGCCTATCCGATGGACCGGCTAATTCAGCTTTTTAAATATGAACAGAAACTGTATTTA
GAAAATCTGCTGGCAGGTACCCTGCTCAGCTTAAACTTACCTAAAGTCAGTGCCGTGGTACCAATGCCGATCTCAACCGA
AAAGCTGGTACAGCGTGGTTATAACCAGTCATTACTACTCGCCAAGCATGTCGCCAGACATTTGAATGTGCCAGTGTGGC
AACCGATAACCCGACTTAAGCAGCATTCACAAAAAGGCTTATGCCGGCTGGAACGAATTGAAGATATTGATACGCAGTTC
CAGATGAATACTTCATCCAAACTGCGTTACCGCAAGGTACTGATTATTGATGATGTCATCACCACAGGCAGCTCAATCCG
AGCACTCAGCCAGAAGCTGGAAGAATTGGGCTGCCAACAGATTAATGCTGCTTGTGTGGCAGGTGCCAAACTTTAA
ATGCCTATGTTTAAGCTGATTCAACAAGGCAAGCATTGGCTAGGCAAGTTACAGCCCTGCCAGCTCTGTCATCATGATTA
TCAAGCGATACATTCAGTCTGTCAGGACTGCTGGCAGCAATTGCCCTGGGCATGTCAGACAGTACAACGACAGGAAATAC
CGGTACAGATTGCCTGCCATTATGCCTATCCGATGGACCGGCTAATTCAGCTTTTTAAATATGAACAGAAACTGTATTTA
GAAAATCTGCTGGCAGGTACCCTGCTCAGCTTAAACTTACCTAAAGTCAGTGCCGTGGTACCAATGCCGATCTCAACCGA
AAAGCTGGTACAGCGTGGTTATAACCAGTCATTACTACTCGCCAAGCATGTCGCCAGACATTTGAATGTGCCAGTGTGGC
AACCGATAACCCGACTTAAGCAGCATTCACAAAAAGGCTTATGCCGGCTGGAACGAATTGAAGATATTGATACGCAGTTC
CAGATGAATACTTCATCCAAACTGCGTTACCGCAAGGTACTGATTATTGATGATGTCATCACCACAGGCAGCTCAATCCG
AGCACTCAGCCAGAAGCTGGAAGAATTGGGCTGCCAACAGATTAATGCTGCTTGTGTGGCAGGTGCCAAACTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baumannii strain A118 |
56.522 |
98.104 |
0.555 |
| comF | Acinetobacter baumannii D1279779 |
56.039 |
98.104 |
0.55 |