Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ABEF87_RS09495 Genome accession   NZ_CP156789
Coordinates   1912085..1912435 (-) Length   116 a.a.
NCBI ID   WP_034587674.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7919     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1907085..1917435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF87_RS09465 (ABEF87_09465) tadA 1907349..1907870 (-) 522 WP_034587661.1 tRNA adenosine(34) deaminase TadA -
  ABEF87_RS09470 (ABEF87_09470) - 1907874..1908998 (-) 1125 WP_034587659.1 enoyl-CoA hydratase/isomerase family protein -
  ABEF87_RS09475 (ABEF87_09475) ung 1908995..1909711 (-) 717 WP_034587658.1 uracil-DNA glycosylase -
  ABEF87_RS09480 (ABEF87_09480) - 1909757..1910353 (-) 597 WP_034587657.1 6-carboxytetrahydropterin synthase -
  ABEF87_RS09485 (ABEF87_09485) gspK 1910499..1911446 (-) 948 WP_347455176.1 type II secretion system minor pseudopilin GspK -
  ABEF87_RS09490 (ABEF87_09490) xcpW 1911456..1912088 (-) 633 WP_034587654.1 type II secretion system protein GspJ Machinery gene
  ABEF87_RS09495 (ABEF87_09495) xcpV 1912085..1912435 (-) 351 WP_034587674.1 type II secretion system protein GspI Machinery gene
  ABEF87_RS09500 (ABEF87_09500) - 1912512..1913072 (-) 561 WP_034587652.1 Tfp pilus assembly protein FimT/FimU -
  ABEF87_RS09505 (ABEF87_09505) - 1913082..1913696 (-) 615 WP_034587650.1 TetR/AcrR family transcriptional regulator -
  ABEF87_RS09510 (ABEF87_09510) - 1913740..1914513 (-) 774 WP_034587648.1 TatD family hydrolase -
  ABEF87_RS09515 (ABEF87_09515) - 1914542..1914883 (-) 342 WP_034587646.1 PilZ domain-containing protein -
  ABEF87_RS09520 (ABEF87_09520) - 1914899..1915885 (-) 987 WP_034587644.1 DNA polymerase III subunit delta' -
  ABEF87_RS09525 (ABEF87_09525) kdsB 1915900..1916661 (-) 762 WP_034587642.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12808.52 Da        Isoelectric Point: 7.2028

>NTDB_id=1002814 ABEF87_RS09495 WP_034587674.1 1912085..1912435(-) (xcpV) [Acinetobacter thermotolerans strain ANC 7919]
MVALAIFATAAMALTKVAMQYTQSTAHAILRTKAQFVALNEAAQMEINQEWLTGTSSRRTIQQGETWQIDKKSEPTISPN
VQRVEIQVSIVNADTGQVESGVSSLVFFNHRVNQTQ

Nucleotide


Download         Length: 351 bp        

>NTDB_id=1002814 ABEF87_RS09495 WP_034587674.1 1912085..1912435(-) (xcpV) [Acinetobacter thermotolerans strain ANC 7919]
ATGGTGGCACTTGCGATTTTTGCCACTGCAGCGATGGCATTGACCAAGGTCGCGATGCAATATACCCAATCTACGGCACA
TGCCATTTTGCGTACCAAAGCCCAGTTTGTGGCTCTAAATGAAGCTGCACAAATGGAGATTAATCAGGAATGGTTGACTG
GAACTTCATCTCGACGAACTATACAGCAGGGTGAAACCTGGCAGATTGATAAAAAATCTGAACCGACGATTAGTCCCAAT
GTGCAACGTGTGGAGATTCAGGTCAGCATCGTCAATGCAGATACCGGGCAGGTGGAATCAGGTGTCAGTAGTCTGGTGTT
CTTTAATCATCGGGTGAATCAGACACAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

67.857

96.552

0.655

Multiple sequence alignment