Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL232_RS07495 Genome accession   NZ_LR134498
Coordinates   1386647..1387198 (-) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC13265     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1381647..1392198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL232_RS07465 (NCTC13265_01510) ctsT 1381699..1382001 (-) 303 WP_002853046.1 type II secretion system protein Machinery gene
  EL232_RS07470 (NCTC13265_01511) proC 1381998..1382729 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  EL232_RS07475 (NCTC13265_01512) fliW 1382729..1383118 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  EL232_RS07480 (NCTC13265_01513) - 1383277..1383924 (+) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  EL232_RS07485 (NCTC13265_01514) lon 1383941..1386316 (+) 2376 WP_002852988.1 endopeptidase La -
  EL232_RS07490 (NCTC13265_01515) rpsR 1386376..1386636 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  EL232_RS07495 (NCTC13265_01516) ssb 1386647..1387198 (-) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  EL232_RS07500 (NCTC13265_01517) rpsF 1387207..1387584 (-) 378 WP_002853062.1 30S ribosomal protein S6 -
  EL232_RS07505 (NCTC13265_01518) - 1387671..1388537 (-) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  EL232_RS07510 (NCTC13265_01519) rseP 1388530..1389636 (-) 1107 WP_002852927.1 RIP metalloprotease RseP -
  EL232_RS07515 (NCTC13265_01520) pgsA 1389633..1390169 (-) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EL232_RS07520 (NCTC13265_01521) rdxA 1390294..1390899 (-) 606 WP_032586321.1 NAD(P)H-dependent oxidoreductase -
  EL232_RS07525 (NCTC13265_01523) - 1390899..1391428 (-) 530 Protein_1454 nitroreductase family protein -
  EL232_RS07530 (NCTC13265_01524) - 1391492..1391916 (-) 425 Protein_1455 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=1002791 EL232_RS07495 WP_002853013.1 1386647..1387198(-) (ssb) [Campylobacter jejuni strain NCTC13265]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1002791 EL232_RS07495 WP_002853013.1 1386647..1387198(-) (ssb) [Campylobacter jejuni strain NCTC13265]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment